Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000317.1

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Reverse (-)

4570 .. 6767

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000317.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgtcgacgtcgcctccaaatacccagaacttcgccgtctaccaccgccaacgtcgacgttgcagccaaggattttggggtggtgcttgtggagcccgagcgccgccgtcgcagatgaccttcacggtggcagagcagttctcgttgaagcccatcgggggtttctgggttgccttgttcaaatcgccgagtatggaatcgatcaagggtggtttgggctttaatggagggaggacggaaggaacccgtcgacgaactcggggaacactcgctctggttgtcgtagatcttgaggaagaagcaggtgccgccaaacgtggtgctgccaaatcaaacctagggtttgcagagctcccgccaccgcattttcagatctcgtatctgcagcttcgcaattcgaaaatggcgacccagatgagcaagaagcgaaagctcgacgagcttctgatgagggagctctctgaggacggctactccggcactgaggttagggttacgccgacgcgcactgagatcataattagggctactcagactcaaaacttgctcggagagaagggaaggaggattagggagctgacctcagttgtgcagaagaggttctccaccagtgactgccatgtgggaagagatgggtgcccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

214

Amino Acids

23.68

Weight (kDa)

10.24

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
AatII	GACGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	293
AccB1I	GGYRCC	2 cut(s)	305, 636
AccI	GTMKAC	4 cut(s)	5, 39, 55, 250
AccII	CGCG	1 cut(s)	505
AciI	CCGC	5 cut(s)	46, 104, 309, 356, 362
AcyI	GRCGYC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	158
AgsI	TTSAA	2 cut(s)	148, 181
AluBI	AGCT	6 cut(s)	352, 388, 433, 442, 457, 577
AluI	AGCT	6 cut(s)	352, 388, 433, 442, 457, 577
Alw21I	GWGCWC	2 cut(s)	354, 459
AlwNI	CAGNNNCTG	1 cut(s)	615
Ama87I	CYCGRG	2 cut(s)	96, 258
ApeKI	GCWGC	3 cut(s)	63, 323, 385
Asp700I	GAANNNNTTC	1 cut(s)	599
AspA2I	CCTAGG	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	103, 507
AsuII	TTCGAA	1 cut(s)	398
AvaI	CYCGRG	2 cut(s)	96, 258
AvrII	CCTAGG	1 cut(s)	337
BaeGI	GKGCMC	1 cut(s)	641
BanI	GGYRCC	2 cut(s)	305, 636
BanII	GRGCYC	3 cut(s)	97, 354, 459
Bbv12I	GWGCWC	2 cut(s)	354, 459
BbvI	GCAGC	3 cut(s)	75, 310, 397
BccI	CCATC	2 cut(s)	161, 626
BceAI	ACGGC	3 cut(s)	20, 91, 484
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	293
BglII	AGATCT	2 cut(s)	286, 372
BisI	GCNGC	5 cut(s)	64, 104, 309, 324, 386
BlnI	CCTAGG	1 cut(s)	337
BlsI	GCNGC	5 cut(s)	65, 105, 310, 325, 387
BmeT110I	CYCGRG	2 cut(s)	96, 258
BmiI	GGNNCC	4 cut(s)	94, 244, 307, 638
BplI	GAGNNNNNCTC	4 cut(s)	125, 157, 566, 598
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	2 cut(s)	67, 337
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 458, 488
Bsc4I	CCNNNNNNNGG	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	609
BseCI	ATCGAT	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	67, 337
BseLI	CCNNNNNNNGG	1 cut(s)	158
BseMII	CTCAG	5 cut(s)	453, 474, 501, 545, 597
BseNI	ACTGG	1 cut(s)	609
BseSI	GKGCMC	1 cut(s)	641
BseXI	GCAGC	3 cut(s)	75, 310, 397
BsgI	GTGCAG	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	505
BshNI	GGYRCC	2 cut(s)	305, 636
BshVI	ATCGAT	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	354, 459
BsiHKCI	CYCGRG	2 cut(s)	96, 258
BsiSI	CCGG	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	158
BsoBI	CYCGRG	2 cut(s)	96, 258
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	4 cut(s)	97, 354, 459, 641
Bsp143I	GATC	4 cut(s)	201, 286, 372, 513
BspACI	CCGC	5 cut(s)	46, 104, 309, 356, 362
BspCNI	CTCAG	5 cut(s)	454, 475, 502, 544, 596
BspDI	ATCGAT	1 cut(s)	200
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	4 cut(s)	94, 244, 307, 638
BspMAI	CTGCAG	1 cut(s)	387
BspMI	ACCTGC	1 cut(s)	293
BspT104I	TTCGAA	1 cut(s)	398
BspT107I	GGYRCC	2 cut(s)	305, 636
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	67, 337
BssMI	GATC	4 cut(s)	201, 286, 372, 513
BssNI	GRCGYC	1 cut(s)	8
BssT1I	CCWWGG	2 cut(s)	67, 337
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	590, 622
BstACI	GRCGYC	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	398
BstDEI	CTNAG	5 cut(s)	462, 483, 510, 531, 583
BstFNI	CGCG	1 cut(s)	505
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	2 cut(s)	103, 507
BstKTI	GATC	4 cut(s)	204, 289, 375, 516
BstMBI	GATC	4 cut(s)	201, 286, 372, 513
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 109, 308, 439, 477
BstSFI	CTRYAG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	641
BstUI	CGCG	1 cut(s)	505
BstV1I	GCAGC	3 cut(s)	75, 310, 397
BstX2I	RGATCY	2 cut(s)	286, 372
BstYI	RGATCY	2 cut(s)	286, 372
Bsu15I	ATCGAT	1 cut(s)	200
BsuTUI	ATCGAT	1 cut(s)	200
BtsIMutI	CAGTG	3 cut(s)	480, 507, 616
BveI	ACCTGC	1 cut(s)	293
CaiI	CAGNNNCTG	1 cut(s)	615
CfoI	GCGC	2 cut(s)	103, 507
ClaI	ATCGAT	1 cut(s)	200
CseI	GACGC	1 cut(s)	511
CviAII	CATG	1 cut(s)	620
DdeI	CTNAG	5 cut(s)	462, 483, 510, 531, 583
DpnI	GATC	4 cut(s)	203, 288, 374, 515
DpnII	GATC	4 cut(s)	201, 286, 372, 513
Eam1104I	CTCTTC	2 cut(s)	590, 622
EarI	CTCTTC	2 cut(s)	590, 622
Ecl136II	GAGCTC	2 cut(s)	352, 457
Eco130I	CCWWGG	2 cut(s)	67, 337
Eco24I	GRGCYC	3 cut(s)	97, 354, 459
Eco53kI	GAGCTC	2 cut(s)	352, 457
Eco88I	CYCGRG	2 cut(s)	96, 258
EcoICRI	GAGCTC	2 cut(s)	352, 457
EcoT14I	CCWWGG	2 cut(s)	67, 337
EcoT38I	GRGCYC	3 cut(s)	97, 354, 459
ErhI	CCWWGG	2 cut(s)	67, 337
FaeI	CATG	1 cut(s)	623
FaiI	YATR	4 cut(s)	194, 518, 621, 643
FatI	CATG	1 cut(s)	619
FauI	CCCGC	1 cut(s)	363
FblI	GTMKAC	4 cut(s)	5, 39, 55, 250
Fnu4HI	GCNGC	5 cut(s)	64, 104, 309, 324, 386
FriOI	GRGCYC	3 cut(s)	97, 354, 459
Fsp4HI	GCNGC	5 cut(s)	64, 104, 309, 324, 386
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	2 cut(s)	102, 506
GluI	GCNGC	5 cut(s)	64, 104, 309, 324, 386
HaeII	RGCGCY	1 cut(s)	104
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	511
HhaI	GCGC	2 cut(s)	103, 507
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	623
Hin6I	GCGC	2 cut(s)	101, 505
HinP1I	GCGC	2 cut(s)	101, 505
HincII	GTYRAC	3 cut(s)	6, 56, 251
HindII	GTYRAC	3 cut(s)	6, 56, 251
HinfI	GANTC	2 cut(s)	197, 535
HpaII	CCGG	1 cut(s)	477
Hpy166II	GTNNAC	4 cut(s)	6, 40, 56, 251
Hpy188I	TCNGA	5 cut(s)	372, 447, 463, 534, 551
Hpy188III	TCNNGA	1 cut(s)	290
Hpy8I	GTNNAC	4 cut(s)	6, 40, 56, 251
Hpy99I	CGWCG	9 cut(s)	10, 13, 57, 60, 112, 252, 255, 440, 505
HpyAV	CCTTC	4 cut(s)	130, 233, 550, 555
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	4 cut(s)	8, 52, 58, 316
HpyCH4V	TGCA	4 cut(s)	63, 347, 385, 592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 109, 308, 439, 477
HpyF3I	CTNAG	5 cut(s)	462, 483, 510, 531, 583
HpySE526I	ACGT	4 cut(s)	8, 52, 58, 316
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	623
HspAI	GCGC	2 cut(s)	101, 505
Kzo9I	GATC	4 cut(s)	201, 286, 372, 513
LmnI	GCTCC	4 cut(s)	92, 357, 454, 574
LpnPI	CCDG	7 cut(s)	38, 151, 260, 288, 425, 490, 622
Lsp1109I	GCAGC	3 cut(s)	75, 310, 397
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	4 cut(s)	8, 52, 58, 316
MaeIII	GTNAC	2 cut(s)	493, 611
MalI	GATC	4 cut(s)	203, 288, 374, 515
MboI	GATC	4 cut(s)	201, 286, 372, 513
MboII	GAAGA	3 cut(s)	308, 607, 639
MflI	RGATCY	2 cut(s)	286, 372
MhlI	GDGCHC	4 cut(s)	97, 354, 459, 641
MluCI	AATT	2 cut(s)	394, 519
MlyI	GAGTC	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	1 cut(s)	222
MspI	CCGG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	5 cut(s)	92, 109, 308, 439, 477
NdeII	GATC	4 cut(s)	201, 286, 372, 513
NlaIII	CATG	1 cut(s)	623
NlaIV	GGNNCC	4 cut(s)	94, 244, 307, 638
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	611
NspV	TTCGAA	1 cut(s)	398
PaqCI	CACCTGC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	65, 105, 310, 325, 387
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Psp124BI	GAGCTC	2 cut(s)	354, 459
PspN4I	GGNNCC	4 cut(s)	94, 244, 307, 638
PstI	CTGCAG	1 cut(s)	387
PstNI	CAGNNNCTG	1 cut(s)	615
PsuI	RGATCY	2 cut(s)	286, 372
SacI	GAGCTC	2 cut(s)	354, 459
SalI	GTCGAC	3 cut(s)	4, 54, 249
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	5 cut(s)	64, 104, 309, 324, 386
Sau3AI	GATC	4 cut(s)	201, 286, 372, 513
SchI	GAGTC	1 cut(s)	529
SduI	GDGCHC	4 cut(s)	97, 354, 459, 641
SfcI	CTRYAG	1 cut(s)	383
SfuI	TTCGAA	1 cut(s)	398
SgrDI	CGTCGACG	2 cut(s)	54, 249
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	394, 519
SsiI	CCGC	5 cut(s)	46, 104, 309, 356, 362
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	2 cut(s)	354, 459
StyI	CCWWGG	2 cut(s)	67, 337
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	4 cut(s)	11, 55, 61, 319
TaqI	TCGA	6 cut(s)	5, 55, 200, 250, 398, 435
TasI	AATT	2 cut(s)	394, 519
TauI	GCSGC	2 cut(s)	106, 311
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	3 cut(s)	487, 514, 616
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	3 cut(s)	63, 323, 385
Tsp45I	GTSAC	1 cut(s)	611
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	3 cut(s)	487, 514, 616
XmaJI	CCTAGG	1 cut(s)	337
XmiI	GTMKAC	4 cut(s)	5, 39, 55, 250
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.