pycom12419g00220

Belongs to the universal ribosomal protein uS3 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012419
Physical Location & Seq
Reverse (-)
493987 .. 494796
810 bp
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UTR
Exon/CDS
Intron
pycom12419g00220.1

Sequence Viewer

Length: 207 bp
ATGCAAACCAAGATCATTATCAGAGCCATTCGGACTCACGGCGTTCTTGGTTTAGGTGAAAAGGGAAAAATAATTAGAGAACTGGCATTTGTTGTTCAGAAGCGTCTTAAGTTTCATGAGAACAGTGTTGAGCTTTATGCAAAGAAAGTCAACAACCAAGGGCTTTGTGCCATTGCTCAGCATAGCCTTTGCATTACAAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.66

Weight (kDa)

10.03

Isoelectric Point (pI)

5.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 107
AluBI AGCT 2 cut(s) 133, 201
AluI AGCT 2 cut(s) 133, 201
AsuHPI GGTGA 1 cut(s) 68
BceAI ACGGC 1 cut(s) 55
BfrI CTTAAG 1 cut(s) 107
BlpI GCTNAGC 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 157
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 17
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 87
Bsp143I GATC 1 cut(s) 12
Bsp1720I GCTNAGC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 115
BspTI CTTAAG 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 107
BstDEI CTNAG 1 cut(s) 177
BstKTI GATC 1 cut(s) 15
BstMBI GATC 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 130
CciI TCATGA 1 cut(s) 115
CseI GACGC 1 cut(s) 92
CviAII CATG 1 cut(s) 116
CviJI RGCY 5 cut(s) 26, 133, 163, 186, 201
CviKI_1 RGCY 5 cut(s) 26, 133, 163, 186, 201
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 119
FaiI YATR 3 cut(s) 117, 138, 183
FatI CATG 1 cut(s) 115
HgaI GACGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 119
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 1 cut(s) 34
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 23, 33, 99
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 151
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 4, 140, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 119
Kzo9I GATC 1 cut(s) 12
LpnPI CCDG 1 cut(s) 68
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MluCI AATT 1 cut(s) 72
MlyI GAGTC 1 cut(s) 28
MseI TTAA 1 cut(s) 108
MspCI CTTAAG 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 1 cut(s) 12
NlaIII CATG 1 cut(s) 119
PagI TCATGA 1 cut(s) 115
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 1 cut(s) 12
SchI GAGTC 1 cut(s) 28
SetI ASST 3 cut(s) 58, 135, 203
SgeI CNNG 6 cut(s) 22, 50, 59, 95, 128, 170
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 72
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 125
TasI AATT 1 cut(s) 72
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 130
Vha464I CTTAAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.