Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378567.1

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 801

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378567.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 394 bp

catcgcaatctcgaaaatggcgacccagatgagcaagaagcgaaagttcgtcgccgacggtgttttcttcgccgagctcaacgagcttctgatgagggagctcgcggaggacggctactccggcgctgaggttagggttacgccgatgcgcactgagatcataatcagggcgactcggactcaaaacgtgctcggagagaagggaaggaggattagggagctgacctcagttgtgcagaagaggtttaagttcccggagaaaggtgtggagctttatgctgagaaggtagccaacagagggctctgctctactgcccaggctgagtctcttcgctacaagcttctcggaggcctaccggttcgcaggtatatgattcgattaataatactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

130

Amino Acids

14.84

Weight (kDa)

10.23

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	355
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	261, 298
AgeI	ACCGGT	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	316
AluBI	AGCT	6 cut(s)	77, 86, 101, 221, 272, 341
AluI	AGCT	6 cut(s)	77, 86, 101, 221, 272, 341
Alw21I	GWGCWC	3 cut(s)	79, 103, 193
Alw26I	GTCTC	1 cut(s)	331
AoxI	GGCC	1 cut(s)	350
AseI	ATTAAT	1 cut(s)	381
AsiGI	ACCGGT	1 cut(s)	356
AspLEI	GCGC	2 cut(s)	126, 151
AsuC2I	CCSGG	1 cut(s)	255
BanII	GRGCYC	3 cut(s)	79, 103, 304
Bbv12I	GWGCWC	3 cut(s)	79, 103, 193
BbvCI	CCTCAGC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	127
BfuAI	ACCTGC	1 cut(s)	355
Bme1390I	CCNGG	2 cut(s)	255, 318
BmrFI	CCNGG	2 cut(s)	255, 318
BmsI	GCATC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
Bpu10I	CCTNAGC	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	316
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 298
Bse118I	RCCGGY	1 cut(s)	356
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	261, 298
BseMII	CTCAG	5 cut(s)	118, 145, 241, 271, 313
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	352
BshTI	ACCGGT	1 cut(s)	356
BsiHKAI	GWGCWC	3 cut(s)	79, 103, 193
BsiSI	CCGG	3 cut(s)	121, 255, 357
BslI	CCNNNNNNNGG	2 cut(s)	261, 298
BsmAI	GTCTC	1 cut(s)	331
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	4 cut(s)	79, 103, 193, 304
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	5 cut(s)	119, 146, 240, 272, 314
BspFNI	CGCG	1 cut(s)	105
BspMI	ACCTGC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	356
BssAI	RCCGGY	1 cut(s)	356
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	234, 334
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	5 cut(s)	127, 154, 227, 280, 322
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	2 cut(s)	126, 151
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 121
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	253, 316
BstUI	CGCG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	2 cut(s)	126, 151
Cfr10I	RCCGGY	1 cut(s)	356
CspAI	ACCGGT	1 cut(s)	356
DdeI	CTNAG	5 cut(s)	127, 154, 227, 280, 322
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	234, 334
EarI	CTCTTC	2 cut(s)	234, 334
Ecl136II	GAGCTC	2 cut(s)	77, 101
Eco147I	AGGCCT	1 cut(s)	352
Eco24I	GRGCYC	3 cut(s)	79, 103, 304
Eco53kI	GAGCTC	2 cut(s)	77, 101
EcoICRI	GAGCTC	2 cut(s)	77, 101
EcoRII	CCWGG	1 cut(s)	316
EcoT38I	GRGCYC	3 cut(s)	79, 103, 304
FaiI	YATR	4 cut(s)	162, 277, 370, 372
FriOI	GRGCYC	3 cut(s)	79, 103, 304
FspAI	RTGCGCAY	1 cut(s)	150
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	2 cut(s)	125, 150
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	3 cut(s)	121, 255, 357
HhaI	GCGC	2 cut(s)	126, 151
Hin6I	GCGC	2 cut(s)	124, 149
HinP1I	GCGC	2 cut(s)	124, 149
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	4 cut(s)	173, 179, 324, 374
HpaII	CCGG	3 cut(s)	121, 255, 357
Hpy188I	TCNGA	4 cut(s)	91, 178, 195, 348
Hpy188III	TCNNGA	1 cut(s)	11
Hpy99I	CGWCG	2 cut(s)	54, 60
HpyAV	CCTTC	3 cut(s)	194, 199, 278
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 121
HpyF3I	CTNAG	5 cut(s)	127, 154, 227, 280, 322
HpySE526I	ACGT	1 cut(s)	187
HspAI	GCGC	2 cut(s)	124, 149
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	3 cut(s)	98, 218, 269
LpnPI	CCDG	8 cut(s)	39, 134, 152, 268, 303, 330, 350, 370
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	3 cut(s)	59, 251, 321
MhlI	GDGCHC	4 cut(s)	79, 103, 193, 304
MlyI	GAGTC	3 cut(s)	167, 173, 333
MnlI	CCTC	8 cut(s)	88, 101, 122, 202, 235, 236, 291, 342
MseI	TTAA	2 cut(s)	247, 381
MspI	CCGG	3 cut(s)	121, 255, 357
MspR9I	CCNGG	2 cut(s)	255, 318
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	83, 121
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	1 cut(s)	157
NmeAIII	GCCGAG	1 cut(s)	98
NsbI	TGCGCA	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	374
PfoI	TCCNGGA	1 cut(s)	253
PinAI	ACCGGT	1 cut(s)	356
PleI	GAGTC	3 cut(s)	167, 173, 332
PpsI	GAGTC	3 cut(s)	167, 173, 332
PshBI	ATTAAT	1 cut(s)	381
Psp124BI	GAGCTC	2 cut(s)	79, 103
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
SacI	GAGCTC	2 cut(s)	79, 103
SaqAI	TTAA	2 cut(s)	247, 381
Sau3AI	GATC	1 cut(s)	157
SchI	GAGTC	3 cut(s)	167, 173, 333
ScrFI	CCNGG	2 cut(s)	255, 318
SduI	GDGCHC	4 cut(s)	79, 103, 193, 304
SfaNI	GCATC	1 cut(s)	136
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	105
SstI	GAGCTC	2 cut(s)	79, 103
StuI	AGGCCT	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	253, 316
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	12, 377
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	2 cut(s)	247, 381
Tru9I	TTAA	2 cut(s)	247, 381
TscAI	CASTG	1 cut(s)	158
TspRI	CASTG	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.