Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Forward (+)

35665949 .. 35668164

Gene Structure 2216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G405800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAACCCAGATGAGCAAGAAGCGAAAGTTTGTGGCCGACGGAGTCTTCTTCGCCGAGCTGAATGAGGTTCTGACCAGAGAGCTGGCTGAGGATGGCTACTCTGGCGTCGAAGTCAGGGTCACCCCTGTTCGCACTGAGATCATCATCAGAGCCACTCGTACTCAGAACGTTCTCGGCGAGAAGGGTAGGAGAATTAGGGAGCTGACATCCATAGTTCAGAAGCGGTTCAAGTTCCCCGAGAACAGCGTTGAGCTATACGCTGAGAAGGTGAACAACAGGGGTCTCTGCGCCATTGCTCAGGCTGAATCTCTCCGTTACAAGCTCCTTGGAGGCCTCGCTGTTCGCAGGGCTTGCTATGGTGTGCTGAGATTTGTCATGGAGAGTGGGGCAAAGGGTTGTGAGGTTATTGTGAGTGGAAAGCTCAGGGCACAGCGTGCCAAGTCAATGAAGTTTAAGGATGGTTACATGATATCATCTGGTCAGCCCGTCAATGAATATATTGATTCTGCTGTGCGACATGTTCTTCTTAGACAGGGTGTGCTTGGTATTAAGGTGAAGATCATGCTCGACTGGGATCCTAAGGGTAAGCAGGGGCCAATGACCCCATTGCCTGATTTGGTGACTATCCACTCTCCCAAGGAAGAACAATATCTTCCAGTTCCACCGGTGGCGGCAGTCAACATAGAGGCTCCTGCAGTTGCAGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

238

Amino Acids

26.29

Weight (kDa)

9.7

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	226, 674
AclI	AACGTT	1 cut(s)	171
AclWI	GGATC	2 cut(s)	572, 585
AcoI	YGGCCR	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	437
AfaI	GTAC	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	520
AgeI	ACCGGT	1 cut(s)	667
AgsI	TTSAA	1 cut(s)	232
AluBI	AGCT	7 cut(s)	61, 85, 205, 256, 325, 424, 710
AluI	AGCT	7 cut(s)	61, 85, 205, 256, 325, 424, 710
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	2 cut(s)	572, 585
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	36, 334, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	105, 137
AsiGI	ACCGGT	1 cut(s)	667
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	596
AsuHPI	GGTGA	4 cut(s)	115, 283, 568, 634
AvaI	CYCGRG	1 cut(s)	239
AxyI	CCTNAGG	1 cut(s)	582
BaeGI	GKGCMC	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	577
BbsI	GAAGAC	1 cut(s)	40
BbvCI	CCTCAGC	1 cut(s)	90
BccI	CCATC	2 cut(s)	89, 455
BcoDI	GTCTC	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	696
BisI	GCNGC	1 cut(s)	675
BlsI	GCNGC	1 cut(s)	676
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	596
BmiI	GGNNCC	3 cut(s)	579, 597, 693
BmrI	ACTGGG	1 cut(s)	583
BmuI	ACTGGG	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	40
Bpu10I	CCTNAGC	3 cut(s)	90, 300, 425
BsaBI	GATNNNNATC	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	328, 639
BsaWI	WCCGGW	1 cut(s)	667
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	2 cut(s)	578, 659
Bse21I	CCTNAGG	1 cut(s)	582
Bse3DI	GCAATG	2 cut(s)	294, 608
Bse8I	GATNNNNATC	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	328, 639
BseGI	GGATG	3 cut(s)	100, 209, 466
BseJI	GATNNNNATC	1 cut(s)	146
BseMI	GCAATG	2 cut(s)	294, 608
BseMII	CTCAG	7 cut(s)	81, 129, 179, 255, 314, 359, 439
BseNI	ACTGG	2 cut(s)	578, 659
BseSI	GKGCMC	1 cut(s)	433
BshFI	GGCC	3 cut(s)	38, 336, 598
BshTI	ACCGGT	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	668
BsmAI	GTCTC	1 cut(s)	290
BsnI	GGCC	3 cut(s)	38, 336, 598
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp143I	GATC	3 cut(s)	141, 561, 577
BspACI	CCGC	2 cut(s)	226, 674
BspANI	GGCC	3 cut(s)	38, 336, 598
BspCNI	CTCAG	7 cut(s)	82, 130, 178, 256, 313, 360, 438
BspLI	GGNNCC	3 cut(s)	579, 597, 693
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	2 cut(s)	572, 585
BspTNI	GGTCTC	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	294, 608
BsrFI	RCCGGY	1 cut(s)	667
BsrI	ACTGG	2 cut(s)	578, 659
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	2 cut(s)	328, 639
BssMI	GATC	3 cut(s)	141, 561, 577
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	328, 639
BstACI	GRCGYC	1 cut(s)	108
BstAPI	GCANNNNNTGC	2 cut(s)	354, 437
BstC8I	GCNNGC	3 cut(s)	87, 355, 438
BstDEI	CTNAG	9 cut(s)	90, 138, 165, 264, 300, 368, 425, 530, 582
BstEII	GGTNACC	1 cut(s)	121
BstF5I	GGATG	3 cut(s)	100, 209, 466
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	3 cut(s)	144, 564, 580
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	3 cut(s)	141, 561, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 354, 437
BstNSI	RCATGY	1 cut(s)	524
BstPI	GGTNACC	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	433
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	577
BstXI	CCANNNNNNTGG	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	577
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	3 cut(s)	38, 336, 598
BtsCI	GGATG	3 cut(s)	100, 209, 466
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	3 cut(s)	87, 355, 438
CfoI	GCGC	1 cut(s)	293
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	596
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	162
CspAI	ACCGGT	1 cut(s)	667
CviAII	CATG	4 cut(s)	379, 469, 521, 565
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	9 cut(s)	90, 138, 165, 264, 300, 368, 425, 530, 582
DpnI	GATC	3 cut(s)	143, 563, 579
DpnII	GATC	3 cut(s)	141, 561, 577
DraIII	CACNNNGTG	1 cut(s)	437
EaeI	YGGCCR	1 cut(s)	36
Eco130I	CCWWGG	2 cut(s)	328, 639
Eco147I	AGGCCT	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	474
Eco81I	CCTNAGG	1 cut(s)	582
Eco88I	CYCGRG	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	328, 639
ErhI	CCWWGG	2 cut(s)	328, 639
FaeI	CATG	4 cut(s)	382, 472, 524, 568
FaiI	YATR	9 cut(s)	215, 259, 360, 380, 470, 501, 522, 566, 686
FatI	CATG	4 cut(s)	378, 468, 520, 564
Fnu4HI	GCNGC	1 cut(s)	675
FokI	GGATG	3 cut(s)	107, 196, 473
Fsp4HI	GCNGC	1 cut(s)	675
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	675
HaeIII	GGCC	3 cut(s)	38, 336, 598
HapII	CCGG	1 cut(s)	668
HgaI	GACGC	1 cut(s)	97
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	382, 472, 524, 568
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	3 cut(s)	45, 308, 506
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	4 cut(s)	115, 283, 568, 634
Hpy166II	GTNNAC	2 cut(s)	274, 682
Hpy188I	TCNGA	4 cut(s)	75, 152, 168, 222
Hpy8I	GTNNAC	2 cut(s)	274, 682
Hpy99I	CGWCG	2 cut(s)	44, 113
HpyAV	CCTTC	2 cut(s)	178, 262
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	698, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 354, 437
HpyF3I	CTNAG	9 cut(s)	90, 138, 165, 264, 300, 368, 425, 530, 582
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	382, 472, 524, 568
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	141, 561, 577
LmnI	GCTCC	3 cut(s)	202, 330, 697
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	4 cut(s)	121, 317, 464, 622
MalI	GATC	3 cut(s)	143, 563, 579
MboI	GATC	3 cut(s)	141, 561, 577
MboII	GAAGA	6 cut(s)	40, 43, 518, 571, 647, 656
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	61, 85, 326, 347, 397, 682
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	3 cut(s)	456, 552, 712
MspI	CCGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	3 cut(s)	105, 354, 437
NdeII	GATC	3 cut(s)	141, 561, 577
NlaIII	CATG	4 cut(s)	382, 472, 524, 568
NlaIV	GGNNCC	3 cut(s)	579, 597, 693
NmeAIII	GCCGAG	2 cut(s)	82, 156
NmuCI	GTSAC	2 cut(s)	121, 622
NspI	RCATGY	1 cut(s)	524
PceI	AGGCCT	1 cut(s)	336
PciI	ACATGT	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	308, 506
PflFI	GACNNNGTC	1 cut(s)	44
PinAI	ACCGGT	1 cut(s)	667
PkrI	GCNGC	1 cut(s)	676
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PscI	ACATGT	1 cut(s)	520
Psp1406I	AACGTT	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	579, 597, 693
PspPI	GGNCC	1 cut(s)	596
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	3 cut(s)	456, 552, 712
SatI	GCNGC	1 cut(s)	675
Sau3AI	GATC	3 cut(s)	141, 561, 577
Sau96I	GGNCC	1 cut(s)	596
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	696
SgrAI	CRCCGGYG	1 cut(s)	667
Sse9I	AATT	1 cut(s)	195
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	226, 674
StuI	AGGCCT	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	328, 639
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	111, 570
TasI	AATT	1 cut(s)	195
TauI	GCSGC	1 cut(s)	677
TfiI	GAWTC	2 cut(s)	308, 506
Tru1I	TTAA	3 cut(s)	456, 552, 712
Tru9I	TTAA	3 cut(s)	456, 552, 712
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	121, 622
Tsp45I	GTSAC	2 cut(s)	121, 622
TspDTI	ATGAA	2 cut(s)	464, 510
TspGWI	ACGGA	2 cut(s)	57, 305
TspRI	CASTG	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	44
XceI	RCATGY	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.