Rh5DG393800

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001560
Physical Location & Seq
Reverse (-)
61714346 .. 61714710
365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG393800.1

Sequence Viewer

Length: 243 bp
ATGGCGATCCAGATGAGCAAGAAGCGAAAGCTCGACGAGCTTCTGATGAGGGAGCTCTCTGAAGACGGCTACTCCGGCACTGAGGTTAGGGTTACGCCGACGCGCACTGAGATCATAATTAGGGCTACTCAGACTCAAAACTTGCTCGGAGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCAGTTGTGCAGAAGAGGTTCTCCACCGGTGACTGCCATGTGGGAAGAGATGGGTGCCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

80

Amino Acids

9.09

Weight (kDa)

9.5

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_2 PF07650 10 - 68 1.2e-11 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AccII CGCG 1 cut(s) 103
AcuI CTGAAG 1 cut(s) 81
AgeI ACCGGT 1 cut(s) 206
AluBI AGCT 4 cut(s) 31, 40, 55, 175
AluI AGCT 4 cut(s) 31, 40, 55, 175
Alw21I GWGCWC 1 cut(s) 57
AsiGI ACCGGT 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 57
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 57
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BsaWI WCCGGW 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse118I RCCGGY 1 cut(s) 206
BseMII CTCAG 4 cut(s) 72, 99, 143, 195
BseSI GKGCMC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 234
BshTI ACCGGT 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 75, 207
Bsp1286I GDGCHC 2 cut(s) 57, 239
Bsp143I GATC 2 cut(s) 6, 111
BspCNI CTCAG 4 cut(s) 73, 100, 142, 194
BspFNI CGCG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 2 cut(s) 6, 111
Bst6I CTCTTC 2 cut(s) 188, 220
BstDEI CTNAG 4 cut(s) 81, 108, 129, 181
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 9, 114
BstMBI GATC 2 cut(s) 6, 111
BstMWI GCNNNNNNNGC 2 cut(s) 37, 75
BstSLI GKGCMC 1 cut(s) 239
BstUI CGCG 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 78, 105
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 206
CseI GACGC 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 206
CviAII CATG 1 cut(s) 218
CviJI RGCY 6 cut(s) 31, 40, 55, 69, 125, 175
CviKI_1 RGCY 6 cut(s) 31, 40, 55, 69, 125, 175
DdeI CTNAG 4 cut(s) 81, 108, 129, 181
DpnI GATC 2 cut(s) 8, 113
DpnII GATC 2 cut(s) 6, 111
Eam1104I CTCTTC 2 cut(s) 188, 220
EarI CTCTTC 2 cut(s) 188, 220
Ecl136II GAGCTC 1 cut(s) 55
Eco24I GRGCYC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 1 cut(s) 221
FaiI YATR 3 cut(s) 116, 219, 241
FatI CATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 57
GlaI GCGC 1 cut(s) 104
HapII CCGG 2 cut(s) 75, 207
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HinfI GANTC 1 cut(s) 133
HpaII CCGG 2 cut(s) 75, 207
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 4 cut(s) 45, 61, 132, 149
Hpy188III TCNNGA 1 cut(s) 10
Hpy99I CGWCG 2 cut(s) 38, 103
HpyAV CCTTC 2 cut(s) 148, 153
HpyCH4V TGCA 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 75
HpyF3I CTNAG 4 cut(s) 81, 108, 129, 181
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 6, 111
LmnI GCTCC 2 cut(s) 52, 172
LpnPI CCDG 3 cut(s) 23, 88, 220
MaeIII GTNAC 2 cut(s) 91, 209
MalI GATC 2 cut(s) 8, 113
MboI GATC 2 cut(s) 6, 111
MboII GAAGA 3 cut(s) 74, 205, 237
MhlI GDGCHC 2 cut(s) 57, 239
MluCI AATT 1 cut(s) 117
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 5 cut(s) 42, 76, 156, 189, 190
MroXI GAANNNNTTC 1 cut(s) 197
MspI CCGG 2 cut(s) 75, 207
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 37, 75
NdeII GATC 2 cut(s) 6, 111
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 197
PinAI ACCGGT 1 cut(s) 206
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 236
SacI GAGCTC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 6, 111
SchI GAGTC 1 cut(s) 127
SduI GDGCHC 2 cut(s) 57, 239
SetI ASST 7 cut(s) 33, 42, 57, 87, 177, 182, 200
SgrAI CRCCGGYG 1 cut(s) 206
Sse9I AATT 1 cut(s) 117
SstI GAGCTC 1 cut(s) 57
TaqI TCGA 1 cut(s) 33
TasI AATT 1 cut(s) 117
TscAI CASTG 2 cut(s) 85, 112
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspRI CASTG 2 cut(s) 85, 112
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.