Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Reverse (-)

13545572 .. 13547851

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19070.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGACCTCGACCCAAATGAGCAAGAAGCGTAAGTTCGTCGCCGACGGCGTTTTCTTCGCCGAGCTGAACGAGGTTCTTACCAGAGAGCTCGCCGAAGATGGCTACTCCGGCGTTGAAGTTAGGGTTACTCCGATGCGAACCGAGATCATCATCCGAGCCACTCGAACCCAAAACGTTCTAGGAGAGAAGGGGAGGAGGATTAGAGAGCTAACTTCTGTTGTACAGAAGAGGTTTAAGTTTCCAGAAAACAGCGTTGAACTTTACGCTGAGAAGGTTAACAACAGAGGGCTTTGTGCTATTGCTCAGGCTGAGTCTCTCCGGTACAAGCTTCTCGGTGGTCTTGCCGTCCGCAGGGCTTGCTACGGTGTTTTGAGATTTGTCATGGAAAGTGGAGCAAAGGGTTGTGAGGTGATTATTAGTGGAAAGCTAAGGGCTGCACGAGCCAAGTCCATGAAATTCAAAGACGGATACATGATTTCTTCTGGTCAGCCAGTCAACGAATACATCGATGCTGCTGTGAGGCATGTCCTCCTTAGACAGGGTGTGCTTGGTATTAAGGTCAAGATTATGCTCGATTGGGATCCCAAGGGCAAGCAAGGCCCCAAGACCCCCTTACCCGACCTTGTTACAATTCACCAACCGAAGGAGGACGAATATATCAGGCCGGTAGTAGCAGCCCCTGTAGCAGAGGATTTTTTGGCCCCATCTGTGATCGAGTCCCCGGTCCCGATTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

248

Amino Acids

27.42

Weight (kDa)

9.61

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	352
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	2 cut(s)	578, 591
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	2 cut(s)	225, 326
AfiI	CCNNNNNNNGG	4 cut(s)	354, 541, 646, 736
AgsI	TTSAA	3 cut(s)	119, 260, 463
AluBI	AGCT	5 cut(s)	67, 91, 211, 331, 430
AluI	AGCT	5 cut(s)	67, 91, 211, 331, 430
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	578, 591
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	3 cut(s)	601, 665, 702
ApeKI	GCWGC	3 cut(s)	437, 515, 677
ApoI	RAATTY	1 cut(s)	458
AspS9I	GGNCC	3 cut(s)	602, 703, 727
AsuC2I	CCSGG	1 cut(s)	725
AsuHPI	GGTGA	2 cut(s)	424, 629
AvaII	GGWCC	1 cut(s)	727
BamHI	GGATCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	3 cut(s)	424, 502, 689
BccI	CCATC	2 cut(s)	95, 715
BceAI	ACGGC	2 cut(s)	64, 332
BciVI	GTATCC	1 cut(s)	464
BcnI	CCSGG	1 cut(s)	725
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	684
BfuI	GTATCC	1 cut(s)	464
BisI	GCNGC	3 cut(s)	438, 516, 678
BlsI	GCNGC	3 cut(s)	439, 517, 679
Bme1390I	CCNGG	1 cut(s)	725
Bme18I	GGWCC	1 cut(s)	727
BmgT120I	GGNCC	3 cut(s)	602, 703, 727
BmiI	GGNNCC	4 cut(s)	585, 604, 705, 729
BmrFI	CCNGG	1 cut(s)	725
BmsI	GCATC	2 cut(s)	126, 502
Bpu10I	CCTNAGC	2 cut(s)	306, 431
BpuMI	CCSGG	1 cut(s)	725
Bsa29I	ATCGAT	1 cut(s)	510
BsaBI	GATNNNNATC	2 cut(s)	152, 582
BsaJI	CCNNGG	2 cut(s)	588, 723
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	4 cut(s)	354, 541, 646, 736
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	494
Bse8I	GATNNNNATC	2 cut(s)	152, 582
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	588, 723
BseGI	GGATG	1 cut(s)	153
BseJI	GATNNNNATC	2 cut(s)	152, 582
BseLI	CCNNNNNNNGG	4 cut(s)	354, 541, 646, 736
BseMII	CTCAG	3 cut(s)	261, 303, 320
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	424, 502, 689
BsgI	GTGCAG	1 cut(s)	423
BshFI	GGCC	3 cut(s)	603, 667, 704
BshVI	ATCGAT	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	4 cut(s)	111, 322, 668, 725
BslFI	GGGAC	2 cut(s)	706, 713
BslI	CCNNNNNNNGG	4 cut(s)	354, 541, 646, 736
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	2 cut(s)	706, 713
BsnI	GGCC	3 cut(s)	603, 667, 704
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	147, 583, 714
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	3 cut(s)	603, 667, 704
BspCNI	CTCAG	3 cut(s)	262, 304, 319
BspDI	ATCGAT	1 cut(s)	510
BspLI	GGNNCC	4 cut(s)	585, 604, 705, 729
BspPI	GGATC	2 cut(s)	578, 591
BsrFI	RCCGGY	1 cut(s)	667
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	2 cut(s)	588, 723
BssMI	GATC	3 cut(s)	147, 583, 714
BssSI	CACGAG	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	588
Bst2BI	CACGAG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	223
BstC8I	GCNNGC	3 cut(s)	93, 361, 596
BstDEI	CTNAG	5 cut(s)	270, 306, 312, 431, 536
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	1 cut(s)	153
BstKTI	GATC	3 cut(s)	150, 586, 717
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	147, 583, 714
BstMWI	GCNNNNNNNGC	5 cut(s)	111, 360, 443, 600, 686
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	723
BstSFI	CTRYAG	1 cut(s)	684
BstV1I	GCAGC	3 cut(s)	424, 502, 689
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
Bsu15I	ATCGAT	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	3 cut(s)	603, 667, 704
BsuTUI	ATCGAT	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	93, 361, 596
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	3 cut(s)	602, 703, 727
ClaI	ATCGAT	1 cut(s)	510
Csp6I	GTAC	2 cut(s)	224, 325
CviAII	CATG	4 cut(s)	385, 454, 475, 527
CviQI	GTAC	2 cut(s)	224, 325
DdeI	CTNAG	5 cut(s)	270, 306, 312, 431, 536
DpnI	GATC	3 cut(s)	149, 585, 716
DpnII	GATC	3 cut(s)	147, 583, 714
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	727
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	602
EcoT14I	CCWWGG	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	4 cut(s)	388, 457, 478, 530
FaiI	YATR	6 cut(s)	386, 455, 476, 528, 572, 660
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	2 cut(s)	706, 713
FatI	CATG	4 cut(s)	384, 453, 474, 526
Fnu4HI	GCNGC	3 cut(s)	438, 516, 678
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	3 cut(s)	438, 516, 678
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	3 cut(s)	438, 516, 678
HaeIII	GGCC	3 cut(s)	603, 667, 704
HapII	CCGG	4 cut(s)	111, 322, 668, 725
Hin1II	CATG	4 cut(s)	388, 457, 478, 530
HincII	GTYRAC	2 cut(s)	280, 499
HindII	GTYRAC	2 cut(s)	280, 499
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	2 cut(s)	314, 719
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	4 cut(s)	111, 322, 668, 725
HphI	GGTGA	2 cut(s)	424, 629
Hpy166II	GTNNAC	2 cut(s)	280, 499
Hpy188I	TCNGA	2 cut(s)	135, 158
Hpy188III	TCNNGA	3 cut(s)	245, 565, 730
Hpy8I	GTNNAC	2 cut(s)	280, 499
Hpy99I	CGWCG	2 cut(s)	44, 50
HpyAV	CCTTC	3 cut(s)	184, 268, 640
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	1 cut(s)	440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	111, 360, 443, 600, 686
HpyF3I	CTNAG	5 cut(s)	270, 306, 312, 431, 536
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	388, 457, 478, 530
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	147, 583, 714
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	3 cut(s)	424, 502, 689
LweI	GCATC	2 cut(s)	126, 502
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	127, 628
MalI	GATC	3 cut(s)	149, 585, 716
MboI	GATC	3 cut(s)	147, 583, 714
MboII	GAAGA	4 cut(s)	49, 110, 241, 474
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	2 cut(s)	458, 633
MlyI	GAGTC	2 cut(s)	323, 728
MseI	TTAA	3 cut(s)	237, 279, 558
MspI	CCGG	4 cut(s)	111, 322, 668, 725
MspR9I	CCNGG	1 cut(s)	725
MwoI	GCNNNNNNNGC	5 cut(s)	111, 360, 443, 600, 686
NciI	CCSGG	1 cut(s)	725
NdeII	GATC	3 cut(s)	147, 583, 714
NlaIII	CATG	4 cut(s)	388, 457, 478, 530
NlaIV	GGNNCC	4 cut(s)	585, 604, 705, 729
NmeAIII	GCCGAG	1 cut(s)	88
NspI	RCATGY	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 507
PkrI	GCNGC	3 cut(s)	439, 517, 679
PleI	GAGTC	2 cut(s)	322, 727
PpsI	GAGTC	2 cut(s)	322, 727
Psp124BI	GAGCTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	177
PspN4I	GGNNCC	4 cut(s)	585, 604, 705, 729
PspPI	GGNCC	3 cut(s)	602, 703, 727
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	2 cut(s)	225, 326
RsaNI	GTAC	2 cut(s)	224, 325
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	237, 279, 558
SatI	GCNGC	3 cut(s)	438, 516, 678
Sau3AI	GATC	3 cut(s)	147, 583, 714
Sau96I	GGNCC	3 cut(s)	602, 703, 727
SchI	GAGTC	2 cut(s)	323, 728
ScrFI	CCNGG	1 cut(s)	725
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	2 cut(s)	126, 502
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	727
Sse9I	AATT	2 cut(s)	458, 633
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	182
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	723
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	5 cut(s)	11, 166, 510, 576, 717
TasI	AATT	2 cut(s)	458, 633
TatI	WGTACW	1 cut(s)	223
Tru1I	TTAA	3 cut(s)	237, 279, 558
Tru9I	TTAA	3 cut(s)	237, 279, 558
TseI	GCWGC	3 cut(s)	437, 515, 677
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	727
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	1 cut(s)	530
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.