Rroxscaffold_2G00147180

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001560
Physical Location & Seq
Forward (+)
85126747 .. 85129103
2357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147180.1

Sequence Viewer

Length: 762 bp
ATGGCGACCCAGATGAGCAAGAAGCGAAAGTTCGTCGCCGACGGTGTTTTCTTCGCCGAACTCAACGAGCTTCTGATGAGAGAGCTCGCCGAGGACGGCTACTCCGGCGCTGAGGTTAGGGTTACGCCGATGCGGACTGAGATCATAATCAGGGCGACTCGGACTCAAAACGTGCTCGGAGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCAGTTGTGCAGAAGAGGTTTAAGTTCCCGGAGAAAGGTGTGGAGCTTTATGCTGAGAAGGTAGCCAACAGAGGGCTCTGCTCTACTGCCCAGGCTGAGTCTCTTCGCTACAAGCTTCTCGGAGGCCTACCGGTTCGCAGGGCGTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCAAAGGGATGTGAGGTGATTGTTAGTGGAAAGCTGAGGGCACAGAGAGCCAAGTCCATGAAGTTCAAGGACGGATACATGATTTCTTCTGGTCAGCCAGTCAATGAGTACATTGACGCAGCTGTGAGACATGTTCTCCTTAGACAGGTTGGCTCCCATCTTCTGGGTGTTCTTGGTATTAAGGTCAAGATCATGCTCGACTGGGATCCCAAGGGAAAGCAAGGTCCCATGACTCCTCTACCGGATCTTGTTACAATCCACCAACCAAAGGATGATGAGTTTGTCAGGCGGGCACCAGAAATTGAAGCAGCACCTATTTTGGCCCCAACTGATATTGAGGTCCCAGCCATCCCAGCCCTCCCAGTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

253

Amino Acids

28.07

Weight (kDa)

9.63

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_2 PF07650 20 - 94 1.4e-13 KH domain
Ribosomal_S3_C PF00189 106 - 194 1.7e-22 Ribosomal protein S3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AccB7I CCANNNNNTGG 1 cut(s) 553
AciI CCGC 2 cut(s) 133, 679
AclWI GGATC 3 cut(s) 590, 603, 642
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 6 cut(s) 245, 282, 535, 553, 658, 754
AflIII ACRYGT 1 cut(s) 520
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 2 cut(s) 457, 695
AjnI CCWGG 1 cut(s) 300
AluBI AGCT 7 cut(s) 70, 85, 205, 256, 325, 424, 512
AluI AGCT 7 cut(s) 70, 85, 205, 256, 325, 424, 512
Alw21I GWGCWC 2 cut(s) 87, 177
Alw26I GTCTC 2 cut(s) 315, 511
AlwI GGATC 3 cut(s) 590, 603, 642
AoxI GGCC 2 cut(s) 334, 711
ApeKI GCWGC 2 cut(s) 509, 698
AsiGI ACCGGT 1 cut(s) 340
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 3 cut(s) 614, 712, 730
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 2 cut(s) 614, 730
BaeGI GKGCMC 2 cut(s) 433, 685
BamHI GGATCC 1 cut(s) 595
BanI GGYRCC 1 cut(s) 682
BanII GRGCYC 2 cut(s) 87, 288
Bbv12I GWGCWC 2 cut(s) 87, 177
BbvCI CCTCAGC 2 cut(s) 111, 425
BbvI GCAGC 2 cut(s) 521, 710
BccI CCATC 2 cut(s) 555, 746
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 302
BciVI GTATCC 1 cut(s) 458
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 2 cut(s) 315, 511
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 2 cut(s) 510, 699
BlsI GCNGC 2 cut(s) 511, 700
Bme1390I CCNGG 2 cut(s) 239, 302
Bme18I GGWCC 2 cut(s) 614, 730
BmgT120I GGNCC 3 cut(s) 614, 712, 730
BmiI GGNNCC 6 cut(s) 544, 597, 616, 684, 714, 732
BmrFI CCNGG 2 cut(s) 239, 302
BmrI ACTGGG 2 cut(s) 601, 746
BmsI GCATC 1 cut(s) 120
BmuI ACTGGG 2 cut(s) 601, 746
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 2 cut(s) 111, 425
BpuMI CCSGG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 3 cut(s) 90, 300, 600
BsaWI WCCGGW 2 cut(s) 340, 631
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 510, 540
Bsc4I CCNNNNNNNGG 6 cut(s) 245, 282, 535, 553, 658, 754
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 3 cut(s) 488, 596, 752
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 3 cut(s) 90, 300, 600
BseGI GGATG 3 cut(s) 404, 667, 738
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 6 cut(s) 245, 282, 535, 553, 658, 754
BseMII CTCAG 6 cut(s) 102, 129, 225, 255, 297, 416
BseNI ACTGG 3 cut(s) 488, 596, 752
BseRI GAGGAG 1 cut(s) 615
BseSI GKGCMC 2 cut(s) 433, 685
BseXI GCAGC 2 cut(s) 521, 710
BseYI CCCAGC 2 cut(s) 733, 742
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 336, 713
BshNI GGYRCC 1 cut(s) 682
BshTI ACCGGT 1 cut(s) 340
BsiHKAI GWGCWC 2 cut(s) 87, 177
BsiSI CCGG 4 cut(s) 105, 239, 341, 632
BslFI GGGAC 2 cut(s) 600, 716
BslI CCNNNNNNNGG 6 cut(s) 245, 282, 535, 553, 658, 754
BsmAI GTCTC 2 cut(s) 315, 511
BsmFI GGGAC 2 cut(s) 600, 716
BsnI GGCC 2 cut(s) 336, 713
Bsp1286I GDGCHC 5 cut(s) 87, 177, 288, 433, 685
Bsp143I GATC 4 cut(s) 141, 579, 595, 634
BspACI CCGC 2 cut(s) 133, 679
BspANI GGCC 2 cut(s) 336, 713
BspCNI CTCAG 6 cut(s) 103, 130, 224, 256, 298, 417
BspLI GGNNCC 6 cut(s) 544, 597, 616, 684, 714, 732
BspPI GGATC 3 cut(s) 590, 603, 642
BspT107I GGYRCC 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 3 cut(s) 488, 596, 752
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 3 cut(s) 90, 300, 600
BssMI GATC 4 cut(s) 141, 579, 595, 634
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 218, 318
BstAPI GCANNNNNTGC 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 87, 355, 681
BstDEI CTNAG 7 cut(s) 111, 138, 211, 264, 306, 425, 530
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 3 cut(s) 404, 667, 738
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 4 cut(s) 144, 582, 598, 637
BstMAI GTCTC 2 cut(s) 315, 511
BstMBI GATC 4 cut(s) 141, 579, 595, 634
BstMWI GCNNNNNNNGC 4 cut(s) 105, 354, 437, 743
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 2 cut(s) 237, 300
BstSLI GKGCMC 2 cut(s) 433, 685
BstV1I GCAGC 2 cut(s) 521, 710
BstX2I RGATCY 2 cut(s) 595, 634
BstYI RGATCY 2 cut(s) 595, 634
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 2 cut(s) 336, 713
BtsCI GGATG 3 cut(s) 404, 667, 738
BtsIMutI CAGTG 1 cut(s) 759
Cac8I GCNNGC 3 cut(s) 87, 355, 681
CfoI GCGC 1 cut(s) 110
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 3 cut(s) 614, 712, 730
CseI GACGC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 499
CspAI ACCGGT 1 cut(s) 340
CviAII CATG 6 cut(s) 379, 448, 469, 521, 583, 619
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 7 cut(s) 111, 138, 211, 264, 306, 425, 530
DpnI GATC 4 cut(s) 143, 581, 597, 636
DpnII GATC 4 cut(s) 141, 579, 595, 634
Eam1104I CTCTTC 2 cut(s) 218, 318
EarI CTCTTC 2 cut(s) 218, 318
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 600
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 2 cut(s) 87, 288
Eco47I GGWCC 2 cut(s) 614, 730
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoO109I RGGNCCY 2 cut(s) 614, 730
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 2 cut(s) 87, 288
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 6 cut(s) 382, 451, 472, 524, 586, 622
FaiI YATR 9 cut(s) 146, 261, 360, 380, 449, 470, 522, 584, 620
FaqI GGGAC 2 cut(s) 600, 716
FatI CATG 6 cut(s) 378, 447, 468, 520, 582, 618
FauI CCCGC 1 cut(s) 672
Fnu4HI GCNGC 2 cut(s) 510, 699
FokI GGATG 3 cut(s) 411, 674, 725
FriOI GRGCYC 2 cut(s) 87, 288
Fsp4HI GCNGC 2 cut(s) 510, 699
GlaI GCGC 1 cut(s) 109
GluI GCNGC 2 cut(s) 510, 699
GsaI CCCAGC 2 cut(s) 737, 746
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 336, 713
HapII CCGG 4 cut(s) 105, 239, 341, 632
HgaI GACGC 1 cut(s) 515
HhaI GCGC 1 cut(s) 110
Hin1II CATG 6 cut(s) 382, 451, 472, 524, 586, 622
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 4 cut(s) 157, 163, 308, 622
HpaII CCGG 4 cut(s) 105, 239, 341, 632
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 4 cut(s) 75, 162, 179, 332
Hpy188III TCNNGA 1 cut(s) 577
Hpy99I CGWCG 2 cut(s) 38, 44
HpyAV CCTTC 3 cut(s) 178, 183, 262
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 220, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 354, 437, 743
HpyF3I CTNAG 7 cut(s) 111, 138, 211, 264, 306, 425, 530
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 6 cut(s) 382, 451, 472, 524, 586, 622
HspAI GCGC 1 cut(s) 108
Kzo9I GATC 4 cut(s) 141, 579, 595, 634
LmnI GCTCC 3 cut(s) 202, 253, 548
Lsp1109I GCAGC 2 cut(s) 521, 710
LweI GCATC 1 cut(s) 120
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 121, 640
MalI GATC 4 cut(s) 143, 581, 597, 636
MboI GATC 4 cut(s) 141, 579, 595, 634
MboII GAAGA 5 cut(s) 43, 235, 305, 468, 542
MflI RGATCY 2 cut(s) 595, 634
MhlI GDGCHC 5 cut(s) 87, 177, 288, 433, 685
MluCI AATT 1 cut(s) 690
MlyI GAGTC 4 cut(s) 151, 157, 317, 616
MseI TTAA 3 cut(s) 231, 570, 760
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 4 cut(s) 105, 239, 341, 632
MspR9I CCNGG 2 cut(s) 239, 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 4 cut(s) 105, 354, 437, 743
NciI CCSGG 1 cut(s) 239
NdeII GATC 4 cut(s) 141, 579, 595, 634
NlaIII CATG 6 cut(s) 382, 451, 472, 524, 586, 622
NlaIV GGNNCC 6 cut(s) 544, 597, 616, 684, 714, 732
NmeAIII GCCGAG 1 cut(s) 115
NspI RCATGY 1 cut(s) 524
PceI AGGCCT 1 cut(s) 336
PciI ACATGT 1 cut(s) 520
PflMI CCANNNNNTGG 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 2 cut(s) 511, 700
PleI GAGTC 4 cut(s) 151, 157, 316, 616
PpsI GAGTC 4 cut(s) 151, 157, 316, 616
PpuMI RGGWCCY 2 cut(s) 614, 730
PscI ACATGT 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 87
Psp5II RGGWCCY 2 cut(s) 614, 730
Psp6I CCWGG 1 cut(s) 300
PspFI CCCAGC 2 cut(s) 733, 742
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 6 cut(s) 544, 597, 616, 684, 714, 732
PspPI GGNCC 3 cut(s) 614, 712, 730
PspPPI RGGWCCY 2 cut(s) 614, 730
PsuI RGATCY 2 cut(s) 595, 634
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 3 cut(s) 231, 570, 760
SatI GCNGC 2 cut(s) 510, 699
Sau3AI GATC 4 cut(s) 141, 579, 595, 634
Sau96I GGNCC 3 cut(s) 614, 712, 730
SchI GAGTC 4 cut(s) 151, 157, 317, 616
ScrFI CCNGG 2 cut(s) 239, 302
SduI GDGCHC 5 cut(s) 87, 177, 288, 433, 685
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 2 cut(s) 614, 730
Sse9I AATT 1 cut(s) 690
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 2 cut(s) 133, 679
SstI GAGCTC 1 cut(s) 87
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 237, 300
StyI CCWWGG 1 cut(s) 600
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 588
TasI AATT 1 cut(s) 690
TatI WGTACW 1 cut(s) 498
Tru1I TTAA 3 cut(s) 231, 570, 760
Tru9I TTAA 3 cut(s) 231, 570, 760
TscAI CASTG 1 cut(s) 759
TseI GCWGC 2 cut(s) 509, 698
TspDTI ATGAA 1 cut(s) 464
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 1 cut(s) 759
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 614, 730
XagI CCTNNNNNAGG 1 cut(s) 533
XceI RCATGY 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.