Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Reverse (-)

7700098 .. 7701757

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG094100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCGACCCAGATGAGCAAGAAGCGAAAGTTCGTCGCAGACGGTGTTTTCTTCGCCGAGCTCAACGAGCTTCTGATGAGGGAGCTCGCCGAGGACGGCTACTCCGGCGCTGAGGTTAGGGTTACGCCGATGCGCACTGAGATCATAATCAGGGCGACTCGGACTCAAAACGTGCTCGGAGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCAGTTGTGCAGAAGAGGTTTAAGTTCCCGGAGAAAGGTGTTGAGCTTTATGCTGAGAAGGTAGCCAACAGAGGGCTCTGCTCTACTGCCCAGGCTGAGTCTCTTCGCTACAAGCTTCTCGGAGGCCTACCGGTTCGCAGGGCCTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCAAAGGGTTGTGAGGTGGGTTTGAATCTAATTGTTCTATTTTTTTTTATTTGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

9.79

Isoelectric Point (pI)

32.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	20 - 94	4.2e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	245, 282
AgeI	ACCGGT	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	415
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	6 cut(s)	61, 70, 85, 205, 256, 325
AluI	AGCT	6 cut(s)	61, 70, 85, 205, 256, 325
Alw21I	GWGCWC	3 cut(s)	63, 87, 177
Alw26I	GTCTC	1 cut(s)	315
AlwNI	CAGNNNCTG	1 cut(s)	354
AoxI	GGCC	2 cut(s)	334, 351
AsiGI	ACCGGT	1 cut(s)	340
AspLEI	GCGC	2 cut(s)	110, 135
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	239
BanII	GRGCYC	3 cut(s)	63, 87, 288
Bbv12I	GWGCWC	3 cut(s)	63, 87, 177
BbvCI	CCTCAGC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	302
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	111
Bme1390I	CCNGG	2 cut(s)	239, 302
BmgT120I	GGNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	239, 302
BmsI	GCATC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
Bpu10I	CCTNAGC	1 cut(s)	111
BpuMI	CCSGG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	90, 300
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 282
Bse118I	RCCGGY	1 cut(s)	340
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	90, 300
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	245, 282
BseMII	CTCAG	5 cut(s)	102, 129, 225, 255, 297
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	2 cut(s)	336, 353
BshTI	ACCGGT	1 cut(s)	340
BsiHKAI	GWGCWC	3 cut(s)	63, 87, 177
BsiSI	CCGG	3 cut(s)	105, 239, 341
BslI	CCNNNNNNNGG	2 cut(s)	245, 282
BsmAI	GTCTC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	336, 353
Bsp1286I	GDGCHC	4 cut(s)	63, 87, 177, 288
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	2 cut(s)	336, 353
BspCNI	CTCAG	5 cut(s)	103, 130, 224, 256, 298
BsrFI	RCCGGY	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	90, 300
BssMI	GATC	1 cut(s)	141
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	218, 318
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	87, 355
BstDEI	CTNAG	5 cut(s)	111, 138, 211, 264, 306
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 135
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 105, 354
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	237, 300
BsuRI	GGCC	2 cut(s)	336, 353
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	87, 355
CaiI	CAGNNNCTG	1 cut(s)	354
CfoI	GCGC	2 cut(s)	110, 135
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	351
CspAI	ACCGGT	1 cut(s)	340
CviAII	CATG	1 cut(s)	379
DdeI	CTNAG	5 cut(s)	111, 138, 211, 264, 306
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
Eam1104I	CTCTTC	2 cut(s)	218, 318
EarI	CTCTTC	2 cut(s)	218, 318
Ecl136II	GAGCTC	2 cut(s)	61, 85
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	3 cut(s)	63, 87, 288
Eco53kI	GAGCTC	2 cut(s)	61, 85
EcoICRI	GAGCTC	2 cut(s)	61, 85
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	300
EcoT38I	GRGCYC	3 cut(s)	63, 87, 288
FaeI	CATG	1 cut(s)	382
FaiI	YATR	4 cut(s)	146, 261, 360, 380
FatI	CATG	1 cut(s)	378
FriOI	GRGCYC	3 cut(s)	63, 87, 288
FspAI	RTGCGCAY	1 cut(s)	134
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	2 cut(s)	109, 134
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	336, 353
HapII	CCGG	3 cut(s)	105, 239, 341
HhaI	GCGC	2 cut(s)	110, 135
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	2 cut(s)	108, 133
HinP1I	GCGC	2 cut(s)	108, 133
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	4 cut(s)	157, 163, 308, 415
HpaII	CCGG	3 cut(s)	105, 239, 341
Hpy188I	TCNGA	4 cut(s)	75, 162, 179, 332
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	178, 183, 262
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	220, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 105, 354
HpyF3I	CTNAG	5 cut(s)	111, 138, 211, 264, 306
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	2 cut(s)	108, 133
Kzo9I	GATC	1 cut(s)	141
LmnI	GCTCC	2 cut(s)	82, 202
LpnPI	CCDG	9 cut(s)	23, 118, 136, 252, 287, 314, 334, 354, 367
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	3 cut(s)	43, 235, 305
MhlI	GDGCHC	4 cut(s)	63, 87, 177, 288
MluCI	AATT	1 cut(s)	420
MlyI	GAGTC	3 cut(s)	151, 157, 317
MnlI	CCTC	9 cut(s)	72, 85, 106, 186, 219, 220, 275, 326, 397
MseI	TTAA	1 cut(s)	231
MspI	CCGG	3 cut(s)	105, 239, 341
MspR9I	CCNGG	2 cut(s)	239, 302
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	67, 105, 354
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	382
NmeAIII	GCCGAG	2 cut(s)	82, 115
NsbI	TGCGCA	1 cut(s)	134
PceI	AGGCCT	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	415
PfoI	TCCNGGA	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	340
PleI	GAGTC	3 cut(s)	151, 157, 316
PpsI	GAGTC	3 cut(s)	151, 157, 316
Psp124BI	GAGCTC	2 cut(s)	63, 87
Psp6I	CCWGG	1 cut(s)	300
PspGI	CCWGG	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	354
SacI	GAGCTC	2 cut(s)	63, 87
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	3 cut(s)	151, 157, 317
ScrFI	CCNGG	2 cut(s)	239, 302
SduI	GDGCHC	4 cut(s)	63, 87, 177, 288
SfaNI	GCATC	1 cut(s)	120
Sse9I	AATT	1 cut(s)	420
SseBI	AGGCCT	1 cut(s)	336
SstI	GAGCTC	2 cut(s)	63, 87
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	237, 300
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	174
TasI	AATT	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	142
TspRI	CASTG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.