Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Forward (+)

3565168 .. 3567267

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1051900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCGGCAGCTACCCAGATGAGCAAGAAGCGAAAGTTTGTGGCCGACGGAGTTTTCTTCGCCGAGCTGAACGAGGTTCTGACCAGAGAGCTGGCGGAGGACGGCTACTCCGGCGTCGAAGTTAGGGTCACCCCTGTCCGGACTGAAATCATCATCCGAGCCACTCGCACTCAGAACGTCCTTGGCGAGAAGGGAAGAAGGATTAGGGAGCTGACATCTATTGTTCAGAAGCGGTTCAAGTTCCCGGAGAACAGCGTCGAGCTCTATGCTGAGAAGGTGAACAACAGAGGACTCTGTGCCATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTCCTCGGAGGCCTTGCTGTTCGCAGGGCTTGCTATGGTGTGTTGAGATTTGTCATGGAGAGTGGTGCAAAGGGATGTGAGGTTATTGTGAGTGGAAAGCTCAGGGCAGCGCGTGCCAAGTCCATGAAGTTTAAGGATGGGTACATGATTTCCTCTGGTCAGCCCGTCAATGAGTACATTGATGCTGCTGTGAGGCACGTTCTTCTTAGACAGGGTGTGCTTGGTATTAAGGTGAAGATCATGCTCGACTGGGATCCTAAGGGCAAGCAGGGACCAATGACTCCGTTGCCTGATTTGGTGACCATCCACACCCCCAAGGAAGAACAATACCTTCCAGTTCCACCCGCAGCAGTCGACATAGAGCCAGTTCCAGTTGCAGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

239

Amino Acids

26.32

Weight (kDa)

9.63

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	22 - 96	1.5e-14	KH domain
Ribosomal_S3_C	PF00189	108 - 190	4.2e-26	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	1 cut(s)	442
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	4 cut(s)	5, 95, 232, 675
AclWI	GGATC	2 cut(s)	578, 591
AcoI	YGGCCR	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	473, 506
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	1 cut(s)	238
AluBI	AGCT	8 cut(s)	11, 67, 91, 211, 262, 331, 430, 713
AluI	AGCT	8 cut(s)	11, 67, 91, 211, 262, 331, 430, 713
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	578, 591
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	2 cut(s)	42, 340
ApeKI	GCWGC	4 cut(s)	8, 437, 515, 677
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
Asp700I	GAANNNNTTC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	121, 289, 574, 640
AvaII	GGWCC	1 cut(s)	602
AxyI	CCTNAGG	1 cut(s)	588
BamHI	GGATCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BbvI	GCAGC	4 cut(s)	20, 449, 502, 689
BccI	CCATC	2 cut(s)	461, 641
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	321
BisI	GCNGC	5 cut(s)	6, 9, 438, 516, 678
BlsI	GCNGC	5 cut(s)	7, 10, 439, 517, 679
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	602
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	585, 603
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	589
Bpu10I	CCTNAGC	2 cut(s)	306, 431
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	181, 334, 645
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	4 cut(s)	584, 665, 695, 701
Bse21I	CCTNAGG	1 cut(s)	588
Bse3DI	GCAATG	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	138
BseDI	CCNNGG	3 cut(s)	181, 334, 645
BseGI	GGATG	4 cut(s)	153, 410, 472, 633
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	5 cut(s)	185, 261, 303, 320, 445
BseNI	ACTGG	4 cut(s)	584, 665, 695, 701
BseRI	GAGGAG	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	20, 449, 502, 689
Bsh1236I	CGCG	1 cut(s)	442
BshFI	GGCC	2 cut(s)	44, 342
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	3 cut(s)	111, 139, 245
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	2 cut(s)	44, 342
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	567, 583
BspACI	CCGC	4 cut(s)	5, 95, 232, 675
BspANI	GGCC	2 cut(s)	44, 342
BspCNI	CTCAG	5 cut(s)	184, 262, 304, 319, 444
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	585, 603
BspPI	GGATC	2 cut(s)	578, 591
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	4 cut(s)	584, 665, 695, 701
BssECI	CCNNGG	3 cut(s)	181, 334, 645
BssMI	GATC	2 cut(s)	567, 583
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	2 cut(s)	181, 645
Bst6I	CTCTTC	1 cut(s)	324
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	2 cut(s)	360, 443
BstC8I	GCNNGC	4 cut(s)	93, 361, 444, 596
BstDEI	CTNAG	7 cut(s)	171, 270, 306, 312, 431, 536, 588
BstEII	GGTNACC	2 cut(s)	127, 628
BstF5I	GGATG	4 cut(s)	153, 410, 472, 633
BstFNI	CGCG	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	2 cut(s)	570, 586
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	2 cut(s)	567, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 360, 443
BstPI	GGTNACC	2 cut(s)	127, 628
BstSCI	CCNGG	1 cut(s)	243
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	4 cut(s)	20, 449, 502, 689
BstX2I	RGATCY	1 cut(s)	583
BstXI	CCANNNNNNTGG	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	583
Bsu36I	CCTNAGG	1 cut(s)	588
BsuRI	GGCC	2 cut(s)	44, 342
BtsCI	GGATG	4 cut(s)	153, 410, 472, 633
Cac8I	GCNNGC	4 cut(s)	93, 361, 444, 596
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	602
CseI	GACGC	2 cut(s)	103, 244
Csp6I	GTAC	2 cut(s)	472, 505
CviAII	CATG	4 cut(s)	385, 454, 475, 571
CviQI	GTAC	2 cut(s)	472, 505
DdeI	CTNAG	7 cut(s)	171, 270, 306, 312, 431, 536, 588
DpnI	GATC	2 cut(s)	569, 585
DpnII	GATC	2 cut(s)	567, 583
EaeI	YGGCCR	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	181, 645
Eco147I	AGGCCT	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	602
Eco53kI	GAGCTC	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	588
Eco91I	GGTNACC	2 cut(s)	127, 628
EcoICRI	GAGCTC	1 cut(s)	262
EcoO65I	GGTNACC	2 cut(s)	127, 628
EcoT14I	CCWWGG	2 cut(s)	181, 645
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	2 cut(s)	181, 645
FaeI	CATG	4 cut(s)	388, 457, 478, 574
FaiI	YATR	7 cut(s)	267, 366, 386, 455, 476, 572, 689
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	4 cut(s)	384, 453, 474, 570
FauI	CCCGC	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	5 cut(s)	6, 9, 438, 516, 678
FokI	GGATG	4 cut(s)	140, 417, 479, 620
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	5 cut(s)	6, 9, 438, 516, 678
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	5 cut(s)	6, 9, 438, 516, 678
HaeIII	GGCC	2 cut(s)	44, 342
HapII	CCGG	3 cut(s)	111, 139, 245
HgaI	GACGC	2 cut(s)	103, 244
HhaI	GCGC	1 cut(s)	442
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	388, 457, 478, 574
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	3 cut(s)	291, 314, 610
HpaII	CCGG	3 cut(s)	111, 139, 245
HphI	GGTGA	4 cut(s)	121, 289, 574, 640
Hpy166II	GTNNAC	2 cut(s)	280, 685
Hpy188I	TCNGA	5 cut(s)	81, 158, 174, 228, 338
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	2 cut(s)	280, 685
Hpy99I	CGWCG	3 cut(s)	50, 119, 260
HpyAV	CCTTC	4 cut(s)	184, 192, 268, 671
HpyCH4IV	ACGT	2 cut(s)	177, 528
HpyCH4V	TGCA	2 cut(s)	398, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 360, 443
HpyF3I	CTNAG	7 cut(s)	171, 270, 306, 312, 431, 536, 588
HpySE526I	ACGT	2 cut(s)	177, 528
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	388, 457, 478, 574
HspAI	GCGC	1 cut(s)	440
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	567, 583
LmnI	GCTCC	2 cut(s)	208, 336
Lsp1109I	GCAGC	4 cut(s)	20, 449, 502, 689
LweI	GCATC	1 cut(s)	502
MaeII	ACGT	2 cut(s)	177, 528
MaeIII	GTNAC	3 cut(s)	127, 323, 628
MalI	GATC	2 cut(s)	569, 585
MboI	GATC	2 cut(s)	567, 583
MboII	GAAGA	6 cut(s)	49, 207, 311, 524, 577, 662
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	264
MlyI	GAGTC	3 cut(s)	285, 323, 604
MnlI	CCTC	8 cut(s)	67, 91, 281, 332, 344, 403, 493, 516
MroI	TCCGGA	1 cut(s)	138
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	3 cut(s)	462, 558, 715
MspI	CCGG	3 cut(s)	111, 139, 245
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	3 cut(s)	111, 360, 443
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	567, 583
NlaIII	CATG	4 cut(s)	388, 457, 478, 574
NlaIV	GGNNCC	2 cut(s)	585, 603
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	127, 628
PceI	AGGCCT	1 cut(s)	342
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	233
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	5 cut(s)	7, 10, 439, 517, 679
PleI	GAGTC	3 cut(s)	285, 322, 604
PpsI	GAGTC	3 cut(s)	285, 322, 604
Psp124BI	GAGCTC	1 cut(s)	264
PspEI	GGTNACC	2 cut(s)	127, 628
PspN4I	GGNNCC	2 cut(s)	585, 603
PspPI	GGNCC	1 cut(s)	602
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	2 cut(s)	473, 506
RsaNI	GTAC	2 cut(s)	472, 505
SacI	GAGCTC	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	683
SaqAI	TTAA	3 cut(s)	462, 558, 715
SatI	GCNGC	5 cut(s)	6, 9, 438, 516, 678
Sau3AI	GATC	2 cut(s)	567, 583
Sau96I	GGNCC	1 cut(s)	602
SchI	GAGTC	3 cut(s)	285, 323, 604
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	502
SinI	GGWCC	1 cut(s)	602
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	4 cut(s)	5, 95, 232, 675
SstI	GAGCTC	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	181, 645
TaiI	ACGT	2 cut(s)	180, 531
TaqI	TCGA	4 cut(s)	117, 258, 576, 684
TatI	WGTACW	1 cut(s)	504
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	3 cut(s)	462, 558, 715
Tru9I	TTAA	3 cut(s)	462, 558, 715
TseFI	GTSAC	2 cut(s)	127, 628
TseI	GCWGC	4 cut(s)	8, 437, 515, 677
Tsp45I	GTSAC	2 cut(s)	127, 628
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	2 cut(s)	63, 603
VpaK11BI	GGWCC	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	684
XmnI	GAANNNNTTC	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.