Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Reverse (-)

65517344 .. 65520166

Gene Structure 2823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG443000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTTGTAGGTGAGAAGGGAAAGAGATTAAAGGAACTTACATCTGTTGTTCAGAAGCGTTTCAATTTTCCGGAGAAAAGTGTTGAGCTTTATGCAGAGAAAGTTAACAACCGAGGGCTTTGTGCAATTGCTCAGGCAGAGTCTTTGTGTTACAAGCTTCTAGGAGGGCTTGCTGTCTGCAGGTTCTTGAGATTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003735 GO:0003824 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0008150 GO:0008152 GO:0008534 GO:0009058 GO:0009059 GO:0009506 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

66

Amino Acids

7.47

Weight (kDa)

9.78

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	1 - 38	2e-06	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	70
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	2 cut(s)	88, 157
AluI	AGCT	2 cut(s)	88, 157
Aor13HI	TCCGGA	1 cut(s)	70
Asp700I	GAANNNNTTC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	23
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	70
BseAI	TCCGGA	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	146
BsiSI	CCGG	1 cut(s)	71
Bsp13I	TCCGGA	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	182
BspMI	ACCTGC	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	171
CviJI	RGCY	4 cut(s)	88, 118, 157, 169
CviKI_1	RGCY	4 cut(s)	88, 118, 157, 169
DdeI	CTNAG	1 cut(s)	132
FaiI	YATR	1 cut(s)	93
FspBI	CTAG	1 cut(s)	161
HapII	CCGG	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	140
HpaI	GTTAAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	71
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	71, 187
Hpy8I	GTNNAC	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	95, 125, 180
HpyF3I	CTNAG	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	70
KspAI	GTTAAC	1 cut(s)	106
LpnPI	CCDG	3 cut(s)	84, 119, 166
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	149
MfeI	CAATTG	1 cut(s)	126
MluCI	AATT	2 cut(s)	64, 126
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	2 cut(s)	107, 158
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	3 cut(s)	29, 105, 194
MspI	CCGG	1 cut(s)	71
MunI	CAATTG	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	182
SaqAI	TTAA	3 cut(s)	29, 105, 194
SchI	GAGTC	1 cut(s)	149
SetI	ASST	5 cut(s)	13, 90, 159, 185, 200
SfcI	CTRYAG	1 cut(s)	178
SgeI	CNNG	7 cut(s)	83, 125, 146, 166, 173, 182, 193
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	2 cut(s)	64, 126
SspMI	CTAG	1 cut(s)	161
TasI	AATT	2 cut(s)	64, 126
Tru1I	TTAA	3 cut(s)	29, 105, 194
Tru9I	TTAA	3 cut(s)	29, 105, 194
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.