Rh6BG516200

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001560
Physical Location & Seq
Reverse (-)
71026914 .. 71030019
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG516200.1

Sequence Viewer

Length: 564 bp
ATGGCGACTCAGGTTCAGATGAGCAAGAAACGAAAGTTCGTCGCCGACGGAGTTTTCTTTGCTGAACTGAATGAGGTTCTGACCAGAGAGCTCGCCGAGGATGGTTACTCCGGTGTCGAAGTGAGGGTCACCCCCGTCCGCACTGAGATCATCATTAGAGCCACTCGCACCCAGAATGTTCTCGGTGAGAAGGGGAGGAGGATTAGAGAGCTAACCTCTGTAGTACAGAAGAGGTTCAAGTTTCCCGAGGGAAGTGTAGAGCTTTATGCCGAGAAGGTTAACAATAGGGGACTTTGTGCCATTGCGCAGGCCGAGTCCCTCCGGTACAAACTCCTTGGAGGGCTTGCCGTTCGCAGGGCATGCTATGGTGTTTTGAGATTTGTCATGGAGAGTGGCGCAAAAGGATGTGAGGTTATTGTAAGTGGAAAGCTCAGGGCACAACGTGCCAAGTCGATGAAGTTTAAGGATGGCTATATGATATCCTCCGGTCAACCTGTTAATGAGTACATTGACTCCGCTGTTAGGCACGTTCTTCTTAGACAGGTTTGCCTCTTCTCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

187

Amino Acids

21.03

Weight (kDa)

9.86

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_2 PF07650 22 - 96 8e-15 KH domain
Ribosomal_S3_C PF00189 108 - 181 5.5e-21 Ribosomal protein S3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 306
AciI CCGC 2 cut(s) 139, 516
AdeI CACNNNGTG 1 cut(s) 443
AfaI GTAC 3 cut(s) 225, 326, 506
AfiI CCNNNNNNNGG 2 cut(s) 354, 522
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 4 cut(s) 91, 211, 262, 430
AluI AGCT 4 cut(s) 91, 211, 262, 430
Alw21I GWGCWC 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 309
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 2 cut(s) 307, 398
AsuHPI GGTGA 2 cut(s) 121, 197
AvaI CYCGRG 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 2 cut(s) 95, 461
BceAI ACGGC 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 200, 232
Bpu10I CCTNAGC 1 cut(s) 431
BsaJI CCNNGG 3 cut(s) 96, 246, 334
BsaWI WCCGGW 3 cut(s) 110, 321, 485
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 522
Bse3DI GCAATG 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 96, 246, 334
BseGI GGATG 3 cut(s) 106, 410, 472
BseLI CCNNNNNNNGG 2 cut(s) 354, 522
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 3 cut(s) 23, 135, 445
BseRI GAGGAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 439
BshFI GGCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 3 cut(s) 111, 322, 486
BslFI GGGAC 2 cut(s) 301, 303
BslI CCNNNNNNNGG 2 cut(s) 354, 522
BsmFI GGGAC 2 cut(s) 301, 303
BsnI GGCC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 93, 439
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 2 cut(s) 139, 516
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 3 cut(s) 22, 136, 444
BsrDI GCAATG 1 cut(s) 300
BssECI CCNNGG 3 cut(s) 96, 246, 334
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 224, 557
BstAPI GCANNNNNTGC 2 cut(s) 360, 443
BstC8I GCNNGC 4 cut(s) 93, 309, 345, 361
BstDEI CTNAG 4 cut(s) 9, 144, 431, 536
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 3 cut(s) 106, 410, 472
BstHHI GCGC 2 cut(s) 307, 398
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 360, 443
BstNSI RCATGY 1 cut(s) 363
BstPI GGTNACC 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 439
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 3 cut(s) 106, 410, 472
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 4 cut(s) 93, 309, 345, 361
CfoI GCGC 2 cut(s) 307, 398
Csp6I GTAC 3 cut(s) 224, 325, 505
CviAII CATG 2 cut(s) 360, 385
CviJI RGCY 8 cut(s) 91, 161, 211, 262, 311, 343, 430, 471
CviKI_1 RGCY 8 cut(s) 91, 161, 211, 262, 311, 343, 430, 471
CviQI GTAC 3 cut(s) 224, 325, 505
DdeI CTNAG 4 cut(s) 9, 144, 431, 536
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
DraIII CACNNNGTG 1 cut(s) 443
Eam1104I CTCTTC 2 cut(s) 224, 557
EarI CTCTTC 2 cut(s) 224, 557
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 480
Eco53kI GAGCTC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 91
EcoO65I GGTNACC 1 cut(s) 127
EcoRV GATATC 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 2 cut(s) 363, 388
FaiI YATR 7 cut(s) 267, 361, 366, 386, 474, 476, 559
FaqI GGGAC 2 cut(s) 301, 303
FatI CATG 2 cut(s) 359, 384
FokI GGATG 3 cut(s) 113, 417, 479
FriOI GRGCYC 1 cut(s) 93
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 2 cut(s) 306, 397
HaeIII GGCC 1 cut(s) 311
HapII CCGG 3 cut(s) 111, 322, 486
HhaI GCGC 2 cut(s) 307, 398
Hin1II CATG 2 cut(s) 363, 388
Hin6I GCGC 2 cut(s) 305, 396
HinP1I GCGC 2 cut(s) 305, 396
HincII GTYRAC 2 cut(s) 280, 491
HindII GTYRAC 2 cut(s) 280, 491
HinfI GANTC 3 cut(s) 7, 314, 512
HpaI GTTAAC 1 cut(s) 280
HpaII CCGG 3 cut(s) 111, 322, 486
HphI GGTGA 2 cut(s) 121, 197
Hpy166II GTNNAC 2 cut(s) 280, 491
Hpy188I TCNGA 2 cut(s) 18, 81
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 280, 491
Hpy99I CGWCG 2 cut(s) 44, 50
HpyAV CCTTC 2 cut(s) 184, 268
HpyCH4IV ACGT 2 cut(s) 442, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 443
HpyF3I CTNAG 4 cut(s) 9, 144, 431, 536
HpySE526I ACGT 2 cut(s) 442, 528
Hsp92II CATG 2 cut(s) 363, 388
HspAI GCGC 2 cut(s) 305, 396
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 1 cut(s) 147
MaeII ACGT 2 cut(s) 442, 528
MaeIII GTNAC 2 cut(s) 104, 127
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 3 cut(s) 241, 524, 544
MhlI GDGCHC 2 cut(s) 93, 439
MlyI GAGTC 2 cut(s) 323, 506
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 3 cut(s) 279, 462, 498
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 3 cut(s) 111, 322, 486
MwoI GCNNNNNNNGC 2 cut(s) 360, 443
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 363, 388
NmeAIII GCCGAG 3 cut(s) 121, 295, 337
NmuCI GTSAC 1 cut(s) 127
NsbI TGCGCA 1 cut(s) 306
NspI RCATGY 1 cut(s) 363
PaeI GCATGC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 233
PleI GAGTC 2 cut(s) 322, 506
PpsI GAGTC 2 cut(s) 322, 506
Psp124BI GAGCTC 1 cut(s) 93
PspEI GGTNACC 1 cut(s) 127
RsaI GTAC 3 cut(s) 225, 326, 506
RsaNI GTAC 3 cut(s) 224, 325, 505
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 3 cut(s) 279, 462, 498
Sau3AI GATC 1 cut(s) 147
SchI GAGTC 2 cut(s) 323, 506
SduI GDGCHC 2 cut(s) 93, 439
SfcI CTRYAG 1 cut(s) 219
SphI GCATGC 1 cut(s) 363
SsiI CCGC 2 cut(s) 139, 516
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 1 cut(s) 334
TaiI ACGT 2 cut(s) 445, 531
TaqI TCGA 2 cut(s) 117, 452
TatI WGTACW 2 cut(s) 223, 504
Tru1I TTAA 3 cut(s) 279, 462, 498
Tru9I TTAA 3 cut(s) 279, 462, 498
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 148
XceI RCATGY 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.