Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Reverse (-)

6824567 .. 6827248

Gene Structure 2682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1087300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGACTGCGACCCAAATGAGCAAGAAGCGAAAGTTCGTCGCCGACGGCGTTTTCTTCGCCGAGCTGAACGAGGTGCTGACGAGAGAGCTCGCCGAAGACGGCTACTCCGGCGTTGAAGTTAGGGTTACGCCGATGCGAACCGAGATCATCATCCGAGCCACCCGAACCCAAAACGTTCTCGGAGAGAAGGGGAGGAGGATTAGGGAGCTAACCTCTGTTGTACAGAAGAGGTTTAAGTTTCCAGAAAACAGCGTTGAGCTTTACGCTGAGAAGGTTAACAACAGAGGGCTGTGCGCTATTGCTCAGGCCGAGTCTCTCCGTTACAAGCTTCTCGGTGGCCTTGCCGTCCGCAGGGCTTGCTACGGTGTTTTGAGATTTGTCATGGAAAGTGGAGCAAAGGGTTGTGAGGTGATCATTAGTGGAAAGCTAAGGGCTGCGCGAGCCAAGTCCATGAAATTCAAAGACGGATACATGATTTCTTCTGGTCAGCCAGTCAACGAATACATTGATTCTGCTGTGAGGCACGTCCTCCTTAGACAGGGTGTGCTTGGTATAAAGGTCAAGATTATGCTCGATTGGGATCCCAAGGGCAAGCAAGGCCCCAAGACCCCCTTACCCGACCTTGTTACAATTCACCAACCGAAGGAGGACGTATATATCAGGCCGGCACTAGCTGCCCCTGTTGCAGAGCCTTTTTTAGCCCCAACTGAGGTCGAGGCCCCCGTCCCGATTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

248

Amino Acids

27.37

Weight (kDa)

9.68

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	22 - 96	4.2e-15	KH domain
Ribosomal_S3_C	PF00189	108 - 190	3.2e-26	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	442
AciI	CCGC	1 cut(s)	352
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	2 cut(s)	578, 591
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	5 cut(s)	354, 541, 646, 712, 736
AgsI	TTSAA	2 cut(s)	119, 463
AjiI	CACGTC	1 cut(s)	529
AluBI	AGCT	7 cut(s)	67, 91, 211, 262, 331, 430, 677
AluI	AGCT	7 cut(s)	67, 91, 211, 262, 331, 430, 677
Alw21I	GWGCWC	1 cut(s)	93
Alw26I	GTCTC	1 cut(s)	321
AlwI	GGATC	2 cut(s)	578, 591
AoxI	GGCC	5 cut(s)	309, 340, 601, 665, 720
ApeKI	GCWGC	2 cut(s)	437, 677
ApoI	RAATTY	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	299, 442
AspS9I	GGNCC	2 cut(s)	602, 721
AsuHPI	GGTGA	2 cut(s)	424, 629
BamHI	GGATCC	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	2 cut(s)	424, 664
BceAI	ACGGC	3 cut(s)	64, 118, 332
BciVI	GTATCC	1 cut(s)	464
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	464
BisI	GCNGC	2 cut(s)	438, 678
BlsI	GCNGC	2 cut(s)	439, 679
BmgBI	CACGTC	1 cut(s)	529
BmgT120I	GGNCC	2 cut(s)	602, 721
BmiI	GGNNCC	3 cut(s)	585, 604, 723
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
Bpu10I	CCTNAGC	2 cut(s)	306, 431
BsaBI	GATNNNNATC	2 cut(s)	152, 582
BsaJI	CCNNGG	1 cut(s)	588
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	5 cut(s)	354, 541, 646, 712, 736
Bse118I	RCCGGY	1 cut(s)	667
Bse1I	ACTGG	1 cut(s)	494
Bse8I	GATNNNNATC	2 cut(s)	152, 582
BseDI	CCNNGG	1 cut(s)	588
BseGI	GGATG	1 cut(s)	153
BseJI	GATNNNNATC	2 cut(s)	152, 582
BseLI	CCNNNNNNNGG	5 cut(s)	354, 541, 646, 712, 736
BseMII	CTCAG	3 cut(s)	261, 320, 702
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	424, 664
Bsh1236I	CGCG	1 cut(s)	442
BshFI	GGCC	5 cut(s)	311, 342, 603, 667, 722
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	111, 668
BslFI	GGGAC	1 cut(s)	713
BslI	CCNNNNNNNGG	5 cut(s)	354, 541, 646, 712, 736
BsmAI	GTCTC	1 cut(s)	321
BsmFI	GGGAC	1 cut(s)	713
BsnI	GGCC	5 cut(s)	311, 342, 603, 667, 722
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp1407I	TGTACA	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	147, 414, 583
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	5 cut(s)	311, 342, 603, 667, 722
BspCNI	CTCAG	3 cut(s)	262, 319, 703
BspFNI	CGCG	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	585, 604, 723
BspPI	GGATC	2 cut(s)	578, 591
BsrFI	RCCGGY	1 cut(s)	667
BsrGI	TGTACA	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	667
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	3 cut(s)	147, 414, 583
BssT1I	CCWWGG	1 cut(s)	588
Bst4CI	ACNGT	1 cut(s)	368
Bst6I	CTCTTC	1 cut(s)	224
BstAPI	GCANNNNNTGC	2 cut(s)	360, 677
BstAUI	TGTACA	1 cut(s)	223
BstC8I	GCNNGC	5 cut(s)	93, 361, 444, 596, 669
BstDEI	CTNAG	5 cut(s)	270, 306, 431, 536, 711
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	299, 442
BstKTI	GATC	3 cut(s)	150, 417, 586
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	3 cut(s)	147, 414, 583
BstMWI	GCNNNNNNNGC	6 cut(s)	111, 360, 443, 600, 677, 686
BstUI	CGCG	1 cut(s)	442
BstV1I	GCAGC	2 cut(s)	424, 664
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	5 cut(s)	311, 342, 603, 667, 722
BtrI	CACGTC	1 cut(s)	529
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	5 cut(s)	93, 361, 444, 596, 669
CfoI	GCGC	2 cut(s)	299, 442
Cfr10I	RCCGGY	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	602, 721
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	385, 454, 475
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	5 cut(s)	270, 306, 431, 536, 711
DpnI	GATC	3 cut(s)	149, 416, 585
DpnII	GATC	3 cut(s)	147, 414, 583
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoO109I	RGGNCCY	2 cut(s)	602, 721
EcoT14I	CCWWGG	1 cut(s)	588
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	3 cut(s)	388, 457, 478
FaiI	YATR	7 cut(s)	386, 455, 476, 557, 572, 658, 660
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	1 cut(s)	713
FatI	CATG	3 cut(s)	384, 453, 474
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	438, 678
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	438, 678
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	2 cut(s)	298, 441
GluI	GCNGC	2 cut(s)	438, 678
HaeIII	GGCC	5 cut(s)	311, 342, 603, 667, 722
HapII	CCGG	2 cut(s)	111, 668
HhaI	GCGC	2 cut(s)	299, 442
Hin1II	CATG	3 cut(s)	388, 457, 478
Hin6I	GCGC	2 cut(s)	297, 440
HinP1I	GCGC	2 cut(s)	297, 440
HincII	GTYRAC	2 cut(s)	280, 499
HindII	GTYRAC	2 cut(s)	280, 499
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	2 cut(s)	314, 512
HpaI	GTTAAC	1 cut(s)	280
HpaII	CCGG	2 cut(s)	111, 668
HphI	GGTGA	2 cut(s)	424, 629
Hpy166II	GTNNAC	2 cut(s)	280, 499
Hpy188I	TCNGA	2 cut(s)	158, 185
Hpy188III	TCNNGA	3 cut(s)	245, 565, 730
Hpy8I	GTNNAC	2 cut(s)	280, 499
Hpy99I	CGWCG	2 cut(s)	44, 50
HpyAV	CCTTC	3 cut(s)	184, 268, 640
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	3 cut(s)	177, 528, 654
HpyCH4V	TGCA	1 cut(s)	689
HpyF10VI	GCNNNNNNNGC	6 cut(s)	111, 360, 443, 600, 677, 686
HpyF3I	CTNAG	5 cut(s)	270, 306, 431, 536, 711
HpySE526I	ACGT	3 cut(s)	177, 528, 654
Hsp92II	CATG	3 cut(s)	388, 457, 478
HspAI	GCGC	2 cut(s)	297, 440
KroI	GCCGGC	1 cut(s)	667
KroNI	GCCGGC	1 cut(s)	669
Ksp22I	TGATCA	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	147, 414, 583
LmnI	GCTCC	2 cut(s)	208, 395
Lsp1109I	GCAGC	2 cut(s)	424, 664
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	3 cut(s)	177, 528, 654
MaeIII	GTNAC	3 cut(s)	127, 323, 628
MalI	GATC	3 cut(s)	149, 416, 585
MboI	GATC	3 cut(s)	147, 414, 583
MboII	GAAGA	4 cut(s)	49, 110, 241, 474
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	2 cut(s)	458, 633
MlyI	GAGTC	1 cut(s)	323
MroNI	GCCGGC	1 cut(s)	667
MseI	TTAA	2 cut(s)	237, 279
MspI	CCGG	2 cut(s)	111, 668
MvnI	CGCG	1 cut(s)	442
MwoI	GCNNNNNNNGC	6 cut(s)	111, 360, 443, 600, 677, 686
NaeI	GCCGGC	1 cut(s)	669
NdeII	GATC	3 cut(s)	147, 414, 583
NgoMIV	GCCGGC	1 cut(s)	667
NlaIII	CATG	3 cut(s)	388, 457, 478
NlaIV	GGNNCC	3 cut(s)	585, 604, 723
NmeAIII	GCCGAG	2 cut(s)	88, 337
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 723
PdiI	GCCGGC	1 cut(s)	669
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	439, 679
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	585, 604, 723
PspPI	GGNCC	2 cut(s)	602, 721
PsuI	RGATCY	1 cut(s)	583
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	237, 279
SatI	GCNGC	2 cut(s)	438, 678
Sau3AI	GATC	3 cut(s)	147, 414, 583
Sau96I	GGNCC	2 cut(s)	602, 721
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	93
SfaNI	GCATC	1 cut(s)	126
Sse9I	AATT	2 cut(s)	458, 633
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	674
SstI	GAGCTC	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	588
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	3 cut(s)	180, 531, 657
TaqI	TCGA	2 cut(s)	576, 717
TasI	AATT	2 cut(s)	458, 633
TatI	WGTACW	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	2 cut(s)	237, 279
Tru9I	TTAA	2 cut(s)	237, 279
TseI	GCWGC	2 cut(s)	437, 677
TspDTI	ATGAA	1 cut(s)	470
TspGWI	ACGGA	2 cut(s)	311, 483
XagI	CCTNNNNNAGG	1 cut(s)	539
XapI	RAATTY	1 cut(s)	458
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.