Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Reverse (-)

13710026 .. 13712288

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G35530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGACCCAGATCAGCAAGAAGAGAAAGTTCGTAGCCGATGGTGTGTTTTACGCTGAACTCAATGAGGTTCTAACCAGAGAGCTTGCTGAGGATGGTTACTCTGGTGTTGAGGTTCGCGTCACTCCTATGCGTACTGAGATCATCATTAGAGCCACTCGTACTCAAAACGTTCTCGGTGAGAAGGGAAGGAGGATTAGGGAATTGACATCTCTTGTACAAAAGAGATTCAAATTTCCTCAGGACAGTGTTGAGCTTTATGCTGAGAAGGTTGCTAACAGAGGTCTTTGTGCTATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTTCTTGGTGGTCTTGCTGTTCGTAGGGCGTGCTATGGTGTTTTAAGGTTTGTTATGGAGAGTGGAGCTAAAGGATGCGAAGTCATTGTGAGTGGAAAACTCCGTGCTGCACGTGCTAAGTCGATGAAGTTCAAGGATGGTTACATGGTTTCCTCAGGTCAGCCAACCAAGGAATACATTGATGCTGCAGTTAGGCATGTTCTTCTTAGACAGGGTGTGCTTGGTCTCAAGGTGAAGATCATGCTTGACTGGGACCCCAAGGGCAAACAAGGACCGATGACACCATTGCCTGATGTTGTGATCATCCATACACCGAAAGAAGATGATGTATACATTGCACCTGCTCAGGTTGTTACTCAAGCTGCTTTTGTACCGGAAGCTCCATTAACCACCACAGATTATCCAGCAATGCCAGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0003729 GO:0003735 GO:0003824 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0008150 GO:0008152 GO:0008534 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

248

Amino Acids

27.46

Weight (kDa)

9.57

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	20 - 94	3e-15	KH domain
Ribosomal_S3_C	PF00189	106 - 188	5.8e-25	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	654
AccII	CGCG	1 cut(s)	120
AclI	AACGTT	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	233
AcvI	CACGTG	1 cut(s)	437
AfaI	GTAC	4 cut(s)	136, 163, 219, 696
AgsI	TTSAA	2 cut(s)	232, 457
AluBI	AGCT	6 cut(s)	85, 256, 325, 392, 686, 704
AluI	AGCT	6 cut(s)	85, 256, 325, 392, 686, 704
Alw26I	GTCTC	2 cut(s)	315, 554
ApeKI	GCWGC	3 cut(s)	431, 509, 686
ApoI	RAATTY	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	577, 596
AsuHPI	GGTGA	2 cut(s)	191, 568
AvaII	GGWCC	2 cut(s)	577, 596
AxyI	CCTNAGG	2 cut(s)	240, 478
BbrPI	CACGTG	1 cut(s)	437
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	418, 496, 673
BccI	CCATC	3 cut(s)	35, 89, 455
BclI	TGATCA	1 cut(s)	624
BcoDI	GTCTC	2 cut(s)	315, 554
BfmI	CTRYAG	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	3 cut(s)	432, 510, 687
BlsI	GCNGC	3 cut(s)	433, 511, 688
Bme18I	GGWCC	2 cut(s)	577, 596
BmgT120I	GGNCC	2 cut(s)	577, 596
BmiI	GGNNCC	2 cut(s)	578, 579
BmrI	ACTGGG	1 cut(s)	583
BmsI	GCATC	2 cut(s)	389, 496
BmuI	ACTGGG	1 cut(s)	583
Bpu10I	CCTNAGC	3 cut(s)	90, 300, 669
BpuEI	CTTGAG	2 cut(s)	536, 666
BsaAI	YACGTR	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	492, 582
BsaWI	WCCGGW	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	578, 737
Bse21I	CCTNAGG	2 cut(s)	240, 478
Bse3DI	GCAATG	3 cut(s)	608, 657, 738
BseDI	CCNNGG	2 cut(s)	492, 582
BseGI	GGATG	4 cut(s)	100, 404, 466, 627
BseMI	GCAATG	3 cut(s)	608, 657, 738
BseMII	CTCAG	8 cut(s)	81, 129, 254, 255, 297, 314, 492, 683
BseNI	ACTGG	2 cut(s)	578, 737
BseXI	GCAGC	3 cut(s)	418, 496, 673
BsgI	GTGCAG	1 cut(s)	417
Bsh1236I	CGCG	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	590
BsmAI	GTCTC	2 cut(s)	315, 554
BsmFI	GGGAC	1 cut(s)	590
Bso31I	GGTCTC	1 cut(s)	554
Bsp1407I	TGTACA	1 cut(s)	217
Bsp143I	GATC	4 cut(s)	12, 141, 561, 624
BspCNI	CTCAG	8 cut(s)	82, 130, 253, 256, 298, 313, 491, 682
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	578, 579
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	3 cut(s)	608, 657, 738
BsrGI	TGTACA	1 cut(s)	217
BsrI	ACTGG	2 cut(s)	578, 737
BssECI	CCNNGG	2 cut(s)	492, 582
BssMI	GATC	4 cut(s)	12, 141, 561, 624
BssNAI	GTATAC	1 cut(s)	655
BssT1I	CCWWGG	2 cut(s)	492, 582
Bst1107I	GTATAC	1 cut(s)	655
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	2 cut(s)	17, 318
BstAUI	TGTACA	1 cut(s)	217
BstBAI	YACGTR	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	87, 355
BstF5I	GGATG	4 cut(s)	100, 404, 466, 627
BstFNI	CGCG	1 cut(s)	120
BstKTI	GATC	4 cut(s)	15, 144, 564, 627
BstMAI	GTCTC	2 cut(s)	315, 554
BstMBI	GATC	4 cut(s)	12, 141, 561, 624
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNSI	RCATGY	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	510
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	418, 496, 673
BstZ17I	GTATAC	1 cut(s)	655
Bsu36I	CCTNAGG	2 cut(s)	240, 478
BtsCI	GGATG	4 cut(s)	100, 404, 466, 627
BtsIMutI	CAGTG	1 cut(s)	253
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	87, 355
Cfr13I	GGNCC	2 cut(s)	577, 596
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	135, 162, 218, 695
CviAII	CATG	3 cut(s)	469, 521, 565
CviQI	GTAC	4 cut(s)	135, 162, 218, 695
DpnI	GATC	4 cut(s)	14, 143, 563, 626
DpnII	GATC	4 cut(s)	12, 141, 561, 624
Eam1104I	CTCTTC	2 cut(s)	17, 318
EarI	CTCTTC	2 cut(s)	17, 318
Eco130I	CCWWGG	2 cut(s)	492, 582
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	2 cut(s)	577, 596
Eco72I	CACGTG	1 cut(s)	437
Eco81I	CCTNAGG	2 cut(s)	240, 478
EcoO109I	RGGNCCY	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	492, 582
ErhI	CCWWGG	2 cut(s)	492, 582
FaeI	CATG	3 cut(s)	472, 524, 568
FaiI	YATR	9 cut(s)	131, 261, 360, 380, 470, 522, 566, 633, 655
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	3 cut(s)	468, 520, 564
FbaI	TGATCA	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	3 cut(s)	432, 510, 687
FokI	GGATG	4 cut(s)	107, 411, 473, 614
Fsp4HI	GCNGC	3 cut(s)	432, 510, 687
GluI	GCNGC	3 cut(s)	432, 510, 687
HapII	CCGG	1 cut(s)	698
HgaI	GACGC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	472, 524, 568
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	2 cut(s)	228, 308
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	2 cut(s)	191, 568
Hpy166II	GTNNAC	1 cut(s)	655
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	655
HpyAV	CCTTC	3 cut(s)	178, 183, 262
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	2 cut(s)	171, 436
HpyCH4V	TGCA	3 cut(s)	434, 512, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpySE526I	ACGT	2 cut(s)	171, 436
Hsp92II	CATG	3 cut(s)	472, 524, 568
KflI	GGGWCCC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	12, 141, 561, 624
LmnI	GCTCC	2 cut(s)	389, 709
Lsp1109I	GCAGC	3 cut(s)	418, 496, 673
LweI	GCATC	2 cut(s)	389, 496
MaeII	ACGT	2 cut(s)	171, 436
MaeIII	GTNAC	5 cut(s)	98, 121, 317, 464, 676
MalI	GATC	4 cut(s)	14, 143, 563, 626
MboI	GATC	4 cut(s)	12, 141, 561, 624
MboII	GAAGA	5 cut(s)	34, 305, 518, 571, 656
MluCI	AATT	2 cut(s)	203, 233
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	61, 85, 106, 186, 249, 275, 487
MseI	TTAA	2 cut(s)	368, 710
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	1 cut(s)	698
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	4 cut(s)	12, 141, 561, 624
NlaIII	CATG	3 cut(s)	472, 524, 568
NlaIV	GGNNCC	2 cut(s)	578, 579
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	228
PkrI	GCNGC	3 cut(s)	433, 511, 688
PleI	GAGTC	1 cut(s)	316
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	316
Ppu21I	YACGTR	1 cut(s)	437
PpuMI	RGGWCCY	1 cut(s)	577
Psp1406I	AACGTT	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	577
PspCI	CACGTG	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	578, 579
PspPI	GGNCC	2 cut(s)	577, 596
PspPPI	RGGWCCY	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	514
RsaI	GTAC	4 cut(s)	136, 163, 219, 696
RsaNI	GTAC	4 cut(s)	135, 162, 218, 695
RseI	CAYNNNNRTG	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	368, 710
SatI	GCNGC	3 cut(s)	432, 510, 687
Sau3AI	GATC	4 cut(s)	12, 141, 561, 624
Sau96I	GGNCC	2 cut(s)	577, 596
SchI	GAGTC	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	389, 496
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	577, 596
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	551, 681
SmoI	CTYRAG	2 cut(s)	551, 681
Sse9I	AATT	2 cut(s)	203, 233
StyI	CCWWGG	2 cut(s)	492, 582
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	2 cut(s)	174, 439
TaqI	TCGA	1 cut(s)	446
TaqII	GACCGA	1 cut(s)	613
TasI	AATT	2 cut(s)	203, 233
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	368, 710
Tru9I	TTAA	2 cut(s)	368, 710
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	431, 509, 686
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	2 cut(s)	577, 596
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	1 cut(s)	524
XmiI	GTMKAC	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.