RLG00000010386

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001560
Physical Location & Seq
Forward (+)
1237933 .. 1239651
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010386

Sequence Viewer

Length: 738 bp
ATGGCGACTCAGGTTCAGATGAGCAAGAAACGAAAGTTCGTCGCCGACGGAGTTTTCTTTGCTGAACTGAATGAGGTTCTGACCAGAGAGCTCGCCGAGGATGGTTACTCCGGTGTCGAAGTGAGGGTCACCCCCGTCCGCACTGAAATCATCATTAGAGCCACTCGCACCCAGAATGTTCTCGGTGAGAAGGGGAGGAGGATTAGAGAGCTAACCTCTGTAGTACAGAAGAGGTTCAAGTTTCCCGAGGGAAGTGTAGAGCTTTATGCCGAGAAGGTCAACAATAGGGGACTTTGTGCCATTGCGCAGGCCGAGTCTCTCCGGTACAAACTCCTTGGAGGGCTTGCCGTTCGCAGGGCATGCTATGGTGTTTTGAGATTTGTCATGGAGAGTGGCGCAAAAGGATGTGAGGTTATTGTAAGTGGAAAGCTCAGGGCACAACGTGCCAAGTCGATGAAGTTTAAGGATGGCTATATGATATCCTCCGGTCAACCTGTTAATGAGTACATTGACTCCGCTGTTAGGCACGTTCTTCTTAGACAGGGTGTGCTTGGTATTAAGGTGAAGATCATGCTTGACTGGGATCCCAAGGGGAAGCAGGGACCAATGACCCCTCTCCCTGATTTGGTGACCATCCATACTCCCAAGGAAGAACTCTATACTCCAGCTCCCCCAGCGGGGGCAATCAACATAGATGCACTTCCATCTCCTGTTGCCGTTCCTGTTCCAGTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

246

Amino Acids

27.01

Weight (kDa)

9.7

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_2 PF07650 22 - 96 1.4e-14 KH domain
Ribosomal_S3_C PF00189 108 - 190 1.2e-26 Ribosomal protein S3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 306
AciI CCGC 3 cut(s) 139, 516, 677
AclWI GGATC 2 cut(s) 578, 591
AdeI CACNNNGTG 1 cut(s) 443
AfaI GTAC 3 cut(s) 225, 326, 506
AfiI CCNNNNNNNGG 6 cut(s) 354, 522, 625, 677, 678, 679
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 5 cut(s) 91, 211, 262, 430, 668
AluI AGCT 5 cut(s) 91, 211, 262, 430, 668
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 2 cut(s) 578, 591
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 1 cut(s) 309
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 2 cut(s) 307, 398
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 4 cut(s) 121, 197, 574, 640
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 1 cut(s) 439
BamHI GGATCC 1 cut(s) 583
BanII GRGCYC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 93
BccI CCATC 4 cut(s) 95, 461, 641, 712
BceAI ACGGC 2 cut(s) 332, 701
BcoDI GTCTC 1 cut(s) 321
BfmI CTRYAG 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 602
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 2 cut(s) 585, 603
BmrI ACTGGG 1 cut(s) 589
BmsI GCATC 1 cut(s) 685
BmuI ACTGGG 1 cut(s) 589
BplI GAGNNNNNCTC 2 cut(s) 200, 232
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 431
BsaJI CCNNGG 5 cut(s) 96, 246, 334, 588, 645
BsaWI WCCGGW 3 cut(s) 110, 321, 485
BsaXI ACNNNNNCTCC 4 cut(s) 497, 527, 652, 682
Bsc4I CCNNNNNNNGG 6 cut(s) 354, 522, 625, 677, 678, 679
Bse1I ACTGG 2 cut(s) 584, 728
Bse3DI GCAATG 1 cut(s) 300
BseDI CCNNGG 5 cut(s) 96, 246, 334, 588, 645
BseGI GGATG 4 cut(s) 106, 410, 472, 633
BseLI CCNNNNNNNGG 6 cut(s) 354, 522, 625, 677, 678, 679
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 23, 445
BseNI ACTGG 2 cut(s) 584, 728
BseRI GAGGAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 439
BseYI CCCAGC 1 cut(s) 673
BshFI GGCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 3 cut(s) 111, 322, 486
BslFI GGGAC 2 cut(s) 303, 615
BslI CCNNNNNNNGG 6 cut(s) 354, 522, 625, 677, 678, 679
BsmAI GTCTC 1 cut(s) 321
BsmFI GGGAC 2 cut(s) 303, 615
BsnI GGCC 1 cut(s) 311
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 93, 439
Bsp143I GATC 2 cut(s) 567, 583
BspACI CCGC 3 cut(s) 139, 516, 677
BspANI GGCC 1 cut(s) 311
BspCNI CTCAG 2 cut(s) 22, 444
BspLI GGNNCC 2 cut(s) 585, 603
BspPI GGATC 2 cut(s) 578, 591
BsrDI GCAATG 1 cut(s) 300
BsrI ACTGG 2 cut(s) 584, 728
BssECI CCNNGG 5 cut(s) 96, 246, 334, 588, 645
BssMI GATC 2 cut(s) 567, 583
BssT1I CCWWGG 3 cut(s) 334, 588, 645
Bst6I CTCTTC 1 cut(s) 224
BstAPI GCANNNNNTGC 2 cut(s) 360, 443
BstC8I GCNNGC 4 cut(s) 93, 309, 345, 361
BstDEI CTNAG 3 cut(s) 9, 431, 536
BstEII GGTNACC 2 cut(s) 127, 628
BstF5I GGATG 4 cut(s) 106, 410, 472, 633
BstHHI GCGC 2 cut(s) 307, 398
BstKTI GATC 2 cut(s) 570, 586
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 2 cut(s) 567, 583
BstMWI GCNNNNNNNGC 3 cut(s) 360, 443, 674
BstNSI RCATGY 1 cut(s) 363
BstPI GGTNACC 2 cut(s) 127, 628
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 1 cut(s) 311
BtsCI GGATG 4 cut(s) 106, 410, 472, 633
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 4 cut(s) 93, 309, 345, 361
CfoI GCGC 2 cut(s) 307, 398
Cfr13I GGNCC 1 cut(s) 602
Csp6I GTAC 3 cut(s) 224, 325, 505
CviAII CATG 3 cut(s) 360, 385, 571
CviJI RGCY 9 cut(s) 91, 161, 211, 262, 311, 343, 430, 471, 668
CviKI_1 RGCY 9 cut(s) 91, 161, 211, 262, 311, 343, 430, 471, 668
CviQI GTAC 3 cut(s) 224, 325, 505
DdeI CTNAG 3 cut(s) 9, 431, 536
DpnI GATC 2 cut(s) 569, 585
DpnII GATC 2 cut(s) 567, 583
DraIII CACNNNGTG 1 cut(s) 443
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 3 cut(s) 334, 588, 645
Eco24I GRGCYC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 602
Eco53kI GAGCTC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 245
Eco91I GGTNACC 2 cut(s) 127, 628
EcoICRI GAGCTC 1 cut(s) 91
EcoO65I GGTNACC 2 cut(s) 127, 628
EcoRV GATATC 1 cut(s) 480
EcoT14I CCWWGG 3 cut(s) 334, 588, 645
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 3 cut(s) 334, 588, 645
FaeI CATG 3 cut(s) 363, 388, 574
FaqI GGGAC 2 cut(s) 303, 615
FatI CATG 3 cut(s) 359, 384, 570
FauI CCCGC 1 cut(s) 670
FokI GGATG 4 cut(s) 113, 417, 479, 620
FriOI GRGCYC 1 cut(s) 93
FspI TGCGCA 1 cut(s) 306
GlaI GCGC 2 cut(s) 306, 397
GsaI CCCAGC 1 cut(s) 677
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 1 cut(s) 311
HapII CCGG 3 cut(s) 111, 322, 486
HhaI GCGC 2 cut(s) 307, 398
Hin1II CATG 3 cut(s) 363, 388, 574
Hin6I GCGC 2 cut(s) 305, 396
HinP1I GCGC 2 cut(s) 305, 396
HincII GTYRAC 2 cut(s) 280, 491
HindII GTYRAC 2 cut(s) 280, 491
HinfI GANTC 3 cut(s) 7, 314, 512
HpaII CCGG 3 cut(s) 111, 322, 486
HphI GGTGA 4 cut(s) 121, 197, 574, 640
Hpy166II GTNNAC 2 cut(s) 280, 491
Hpy188I TCNGA 2 cut(s) 18, 81
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 2 cut(s) 280, 491
Hpy99I CGWCG 2 cut(s) 44, 50
HpyAV CCTTC 2 cut(s) 184, 268
HpyCH4IV ACGT 2 cut(s) 442, 528
HpyCH4V TGCA 1 cut(s) 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 443, 674
HpyF3I CTNAG 3 cut(s) 9, 431, 536
HpySE526I ACGT 2 cut(s) 442, 528
Hsp92II CATG 3 cut(s) 363, 388, 574
HspAI GCGC 2 cut(s) 305, 396
Kzo9I GATC 2 cut(s) 567, 583
LmnI GCTCC 1 cut(s) 673
LweI GCATC 1 cut(s) 685
MaeII ACGT 2 cut(s) 442, 528
MaeIII GTNAC 3 cut(s) 104, 127, 628
MalI GATC 2 cut(s) 569, 585
MboI GATC 2 cut(s) 567, 583
MboII GAAGA 4 cut(s) 241, 524, 577, 662
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 2 cut(s) 93, 439
MlyI GAGTC 2 cut(s) 323, 506
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 4 cut(s) 462, 498, 558, 736
MspA1I CMGCKG 2 cut(s) 518, 677
MspI CCGG 3 cut(s) 111, 322, 486
MwoI GCNNNNNNNGC 3 cut(s) 360, 443, 674
NdeII GATC 2 cut(s) 567, 583
NlaIII CATG 3 cut(s) 363, 388, 574
NlaIV GGNNCC 2 cut(s) 585, 603
NmeAIII GCCGAG 3 cut(s) 121, 295, 337
NmuCI GTSAC 2 cut(s) 127, 628
NsbI TGCGCA 1 cut(s) 306
NspI RCATGY 1 cut(s) 363
PaeI GCATGC 1 cut(s) 363
PdmI GAANNNNTTC 1 cut(s) 233
PleI GAGTC 2 cut(s) 322, 506
PpsI GAGTC 2 cut(s) 322, 506
Psp124BI GAGCTC 1 cut(s) 93
PspEI GGTNACC 2 cut(s) 127, 628
PspFI CCCAGC 1 cut(s) 673
PspN4I GGNNCC 2 cut(s) 585, 603
PspPI GGNCC 1 cut(s) 602
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 3 cut(s) 225, 326, 506
RsaNI GTAC 3 cut(s) 224, 325, 505
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 4 cut(s) 462, 498, 558, 736
Sau3AI GATC 2 cut(s) 567, 583
Sau96I GGNCC 1 cut(s) 602
SchI GAGTC 2 cut(s) 323, 506
SduI GDGCHC 2 cut(s) 93, 439
SfaNI GCATC 1 cut(s) 685
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 602
SphI GCATGC 1 cut(s) 363
SsiI CCGC 3 cut(s) 139, 516, 677
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 3 cut(s) 334, 588, 645
TaiI ACGT 2 cut(s) 445, 531
TaqI TCGA 2 cut(s) 117, 452
TatI WGTACW 2 cut(s) 223, 504
Tru1I TTAA 4 cut(s) 462, 498, 558, 736
Tru9I TTAA 4 cut(s) 462, 498, 558, 736
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 2 cut(s) 127, 628
Tsp45I GTSAC 2 cut(s) 127, 628
TspDTI ATGAA 1 cut(s) 470
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 602
XceI RCATGY 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.