Prupe.7G202300_v2.0.a1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001560
Physical Location & Seq
Forward (+)
18824868 .. 18827666
2799 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G202300.1

Sequence Viewer

Length: 741 bp
ATGGCGACCCAAATGAGCAAGAAGCGAAAGTTCGTCGCCGACGGAGTGTTCTTCGCCGAGCTGAATGAAGTTCTCACGAGAGAGCTCGCCGAAGATGGCTACTCTGGCGTTGAAGTTAGGGTCACACCGATGCGTACCGAGATCATAATCAGAGCCACTCGTACCCAGAACGTGCTCGGAGAGAAGGGGAGGAGGATTAGGGAGCTAACCTCAGTGGTACAGAAGAGGTTTAAGTTTCCAGAAAACAGTGTTGAGCTTTATGCTGAGAAGGTTAACAATAGAGGGCTTTGCGCTATTGCCCAAGCTGAGTCTCTCCGTTACAAGCTTCTTGGAGGCCTCGCTGTCCGCAGGGCCTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGGGCCAAGGGTTGTGAGGTGATTGTTAGTGGAAAGCTAAGAGCACAGAGAGCCAAGTCCATGAAGTTCAAAGATGGGTACATGATTTCTTCTGGTCAGCCAGTTAATGAATACATCGATTCTGCTGTGAGGCATGTCCTCCTTAGACAGGGTGTACTTGGTATTAAGGTCAAGATTATGCTTGATTGGGATCCCAAGGGCAAGCAAGGCCCCATGACCCCCTTACCTGACCTTGTTACAATCCACCAACCGAAGGAGGATGAGTATTTCAGGCCGGCAGTAGCAGCAGCTGCAGTAGTGGCACCACCTGTTCTGGGCGCAACTGATATTGATGTCCCCCTGGTTGTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

247

Amino Acids

27.23

Weight (kDa)

9.63

Isoelectric Point (pI)

34.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AciI CCGC 1 cut(s) 346
AclWI GGATC 2 cut(s) 572, 585
AfaI GTAC 5 cut(s) 136, 163, 219, 467, 543
AfiI CCNNNNNNNGG 4 cut(s) 535, 640, 701, 733
AgsI TTSAA 2 cut(s) 113, 457
AjnI CCWGG 1 cut(s) 726
AluBI AGCT 8 cut(s) 61, 85, 205, 256, 305, 325, 424, 677
AluI AGCT 8 cut(s) 61, 85, 205, 256, 305, 325, 424, 677
Alw21I GWGCWC 3 cut(s) 87, 177, 433
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 2 cut(s) 572, 585
AlwNI CAGNNNCTG 2 cut(s) 354, 677
AoxI GGCC 5 cut(s) 334, 351, 390, 595, 659
ApeKI GCWGC 3 cut(s) 671, 674, 677
AspLEI GCGC 2 cut(s) 293, 707
AspS9I GGNCC 3 cut(s) 351, 390, 596
AsuHPI GGTGA 1 cut(s) 418
BamHI GGATCC 1 cut(s) 577
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 87
BauI CACGAG 1 cut(s) 76
Bbv12I GWGCWC 3 cut(s) 87, 177, 433
BbvI GCAGC 3 cut(s) 664, 683, 686
BccI CCATC 2 cut(s) 89, 455
BciT130I CCWGG 1 cut(s) 728
BcoDI GTCTC 1 cut(s) 315
BfmI CTRYAG 1 cut(s) 678
BisI GCNGC 3 cut(s) 672, 675, 678
BlsI GCNGC 3 cut(s) 673, 676, 679
Bme1390I CCNGG 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 351, 390, 596
BmiI GGNNCC 4 cut(s) 391, 579, 598, 690
BmrFI CCNGG 1 cut(s) 728
BmsI GCATC 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bsa29I ATCGAT 1 cut(s) 504
BsaBI GATNNNNATC 2 cut(s) 146, 576
BsaJI CCNNGG 3 cut(s) 393, 582, 726
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 4 cut(s) 535, 640, 701, 733
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 1 cut(s) 488
Bse8I GATNNNNATC 2 cut(s) 146, 576
BseBI CCWGG 1 cut(s) 728
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 3 cut(s) 393, 582, 726
BseGI GGATG 1 cut(s) 652
BseJI GATNNNNATC 2 cut(s) 146, 576
BseLI CCNNNNNNNGG 4 cut(s) 535, 640, 701, 733
BseMII CTCAG 3 cut(s) 225, 255, 297
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 3 cut(s) 664, 683, 686
BshFI GGCC 5 cut(s) 336, 353, 392, 597, 661
BshNI GGYRCC 1 cut(s) 688
BshVI ATCGAT 1 cut(s) 504
BsiHKAI GWGCWC 3 cut(s) 87, 177, 433
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 4 cut(s) 535, 640, 701, 733
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 5 cut(s) 336, 353, 392, 597, 661
Bsp1286I GDGCHC 3 cut(s) 87, 177, 433
Bsp143I GATC 2 cut(s) 141, 577
BspACI CCGC 1 cut(s) 346
BspANI GGCC 5 cut(s) 336, 353, 392, 597, 661
BspCNI CTCAG 3 cut(s) 224, 256, 298
BspDI ATCGAT 1 cut(s) 504
BspLI GGNNCC 4 cut(s) 391, 579, 598, 690
BspMAI CTGCAG 1 cut(s) 682
BspPI GGATC 2 cut(s) 572, 585
BspT107I GGYRCC 1 cut(s) 688
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 1 cut(s) 488
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 3 cut(s) 393, 582, 726
BssMI GATC 2 cut(s) 141, 577
BssSI CACGAG 1 cut(s) 76
BssT1I CCWWGG 2 cut(s) 393, 582
Bst2BI CACGAG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 218
BstAPI GCANNNNNTGC 2 cut(s) 354, 677
BstC8I GCNNGC 4 cut(s) 87, 355, 590, 663
BstDEI CTNAG 5 cut(s) 211, 264, 306, 425, 530
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 652
BstHHI GCGC 2 cut(s) 293, 707
BstKTI GATC 2 cut(s) 144, 580
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 2 cut(s) 141, 577
BstMWI GCNNNNNNNGC 7 cut(s) 105, 354, 437, 594, 671, 677, 686
BstNI CCWGG 1 cut(s) 728
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 726
BstSFI CTRYAG 1 cut(s) 678
BstV1I GCAGC 3 cut(s) 664, 683, 686
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 504
BsuRI GGCC 5 cut(s) 336, 353, 392, 597, 661
BsuTUI ATCGAT 1 cut(s) 504
BtsCI GGATG 1 cut(s) 652
BtsIMutI CAGTG 2 cut(s) 219, 253
Cac8I GCNNGC 4 cut(s) 87, 355, 590, 663
CaiI CAGNNNCTG 2 cut(s) 354, 677
CfoI GCGC 2 cut(s) 293, 707
Cfr10I RCCGGY 1 cut(s) 661
Cfr13I GGNCC 3 cut(s) 351, 390, 596
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 5 cut(s) 135, 162, 218, 466, 542
CviAII CATG 5 cut(s) 379, 448, 469, 521, 601
CviQI GTAC 5 cut(s) 135, 162, 218, 466, 542
DdeI CTNAG 5 cut(s) 211, 264, 306, 425, 530
DpnI GATC 2 cut(s) 143, 579
DpnII GATC 2 cut(s) 141, 577
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 393, 582
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoO109I RGGNCCY 2 cut(s) 351, 596
EcoRII CCWGG 1 cut(s) 726
EcoT14I CCWWGG 2 cut(s) 393, 582
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 2 cut(s) 393, 582
FaeI CATG 5 cut(s) 382, 451, 472, 524, 604
FaiI YATR 9 cut(s) 146, 261, 360, 380, 449, 470, 522, 566, 602
FaqI GGGAC 1 cut(s) 707
FatI CATG 5 cut(s) 378, 447, 468, 520, 600
Fnu4HI GCNGC 3 cut(s) 672, 675, 678
FokI GGATG 1 cut(s) 659
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 3 cut(s) 672, 675, 678
GlaI GCGC 2 cut(s) 292, 706
GluI GCNGC 3 cut(s) 672, 675, 678
HaeIII GGCC 5 cut(s) 336, 353, 392, 597, 661
HapII CCGG 1 cut(s) 662
HhaI GCGC 2 cut(s) 293, 707
Hin1II CATG 5 cut(s) 382, 451, 472, 524, 604
Hin6I GCGC 2 cut(s) 291, 705
HinP1I GCGC 2 cut(s) 291, 705
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 2 cut(s) 308, 506
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 1 cut(s) 662
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 2 cut(s) 274, 542
Hpy188I TCNGA 2 cut(s) 152, 179
Hpy188III TCNNGA 3 cut(s) 76, 239, 559
Hpy8I GTNNAC 2 cut(s) 274, 542
Hpy99I CGWCG 2 cut(s) 38, 44
HpyAV CCTTC 3 cut(s) 178, 262, 634
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 680
HpyF10VI GCNNNNNNNGC 7 cut(s) 105, 354, 437, 594, 671, 677, 686
HpyF3I CTNAG 5 cut(s) 211, 264, 306, 425, 530
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 5 cut(s) 382, 451, 472, 524, 604
HspAI GCGC 2 cut(s) 291, 705
KroI GCCGGC 1 cut(s) 661
KroNI GCCGGC 1 cut(s) 663
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 2 cut(s) 141, 577
LmnI GCTCC 1 cut(s) 202
Lsp1109I GCAGC 3 cut(s) 664, 683, 686
LweI GCATC 1 cut(s) 120
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 121, 317, 622
MalI GATC 2 cut(s) 143, 579
MboI GATC 2 cut(s) 141, 577
MboII GAAGA 4 cut(s) 43, 104, 235, 468
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 3 cut(s) 87, 177, 433
MlyI GAGTC 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 661
MseI TTAA 5 cut(s) 231, 273, 492, 552, 739
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 1 cut(s) 728
MvaI CCWGG 1 cut(s) 728
MwoI GCNNNNNNNGC 7 cut(s) 105, 354, 437, 594, 671, 677, 686
NaeI GCCGGC 1 cut(s) 663
NdeII GATC 2 cut(s) 141, 577
NgoMIV GCCGGC 1 cut(s) 661
NlaIII CATG 5 cut(s) 382, 451, 472, 524, 604
NlaIV GGNNCC 4 cut(s) 391, 579, 598, 690
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 121
NspI RCATGY 1 cut(s) 524
PceI AGGCCT 1 cut(s) 336
PdiI GCCGGC 1 cut(s) 663
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 3 cut(s) 673, 676, 679
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspN4I GGNNCC 4 cut(s) 391, 579, 598, 690
PspPI GGNCC 3 cut(s) 351, 390, 596
PstI CTGCAG 1 cut(s) 682
PstNI CAGNNNCTG 2 cut(s) 354, 677
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 5 cut(s) 136, 163, 219, 467, 543
RsaNI GTAC 5 cut(s) 135, 162, 218, 466, 542
RseI CAYNNNNRTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 5 cut(s) 231, 273, 492, 552, 739
SatI GCNGC 3 cut(s) 672, 675, 678
Sau3AI GATC 2 cut(s) 141, 577
Sau96I GGNCC 3 cut(s) 351, 390, 596
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 728
SduI GDGCHC 3 cut(s) 87, 177, 433
SfaNI GCATC 1 cut(s) 120
SfcI CTRYAG 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 128
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 1 cut(s) 346
SstI GAGCTC 1 cut(s) 87
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 726
StyI CCWWGG 2 cut(s) 393, 582
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 504
TatI WGTACW 1 cut(s) 541
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 5 cut(s) 231, 273, 492, 552, 739
Tru9I TTAA 5 cut(s) 231, 273, 492, 552, 739
TscAI CASTG 2 cut(s) 219, 253
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 3 cut(s) 671, 674, 677
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 3 cut(s) 81, 464, 510
TspGWI ACGGA 2 cut(s) 57, 305
TspRI CASTG 2 cut(s) 219, 253
XagI CCTNNNNNAGG 1 cut(s) 533
XceI RCATGY 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.