RchiOBHm_Chr2g0171721

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001560
Physical Location & Seq
Forward (+)
85292848 .. 85293516
669 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53910

Sequence Viewer

Length: 669 bp
ATGGCGACCCAGATGAGCAAGAAGCGAAAGTTCGTCGCTGACGGTGTTTTCTTCGCCGAGCTCAACGAGCTTCTGATGAGGGAGCTTGCTGAGGACGGCTACTCCGGCGCTGAGGTTAGGGTTACGCCGATGCGCACTGAGATCATAATCAGGGCGACTCGGACTCAAAACGTGCTCGGAGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCAGTTGTGCAGAAGAGGTTTAAGTTCCAGGAGAAAGGTGTGGAGCTTTATGCTGAGAAGGTAGCCAACAGAGGGCTCTGCTCTACTGCCCAGGCTGAGTCTCTTCGCTACAAGCTTCTCGGAGGCCTACCGGTTCGCAGGGCCTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCAAAGGGTTGTGAGGTGATTGTTAGTGGAAAGCTGAGGGCACAGAGAGCCAAGTCCATGAAGTTCAAGGATGGATACATGATTTCTTCTGGTCAGCTAGTCAATGAGTACATTGACGCAGCTGTGAGACATGTTCTCCTTAGACAGGGTGTTCTTGGTATTAAGGTCAAGATCATTCTCGACTGGGATCCCAAGGGCAAGCAAGGACCCATGACTCTTTTACCTGATCTTGTTACTAAAAGAATTATAATTGTGACTGAATTGTATTCCTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

222

Amino Acids

25.05

Weight (kDa)

9.91

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_2 PF07650 20 - 94 6.2e-14 KH domain
Ribosomal_S3_C PF00189 106 - 188 7.3e-26 Ribosomal protein S3, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 638
Acc16I TGCGCA 1 cut(s) 134
AclWI GGATC 2 cut(s) 572, 585
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 2 cut(s) 282, 535
AflIII ACRYGT 1 cut(s) 520
AgeI ACCGGT 1 cut(s) 340
AgsI TTSAA 1 cut(s) 457
AjnI CCWGG 2 cut(s) 237, 300
AluBI AGCT 9 cut(s) 61, 70, 85, 205, 256, 325, 424, 487, 512
AluI AGCT 9 cut(s) 61, 70, 85, 205, 256, 325, 424, 487, 512
Alw21I GWGCWC 2 cut(s) 63, 177
Alw26I GTCTC 2 cut(s) 315, 511
AlwI GGATC 2 cut(s) 572, 585
AlwNI CAGNNNCTG 1 cut(s) 354
AoxI GGCC 2 cut(s) 334, 351
ApeKI GCWGC 1 cut(s) 509
AsiGI ACCGGT 1 cut(s) 340
AspLEI GCGC 2 cut(s) 110, 135
AspS9I GGNCC 2 cut(s) 351, 596
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 433
BamHI GGATCC 1 cut(s) 577
BanII GRGCYC 2 cut(s) 63, 288
Bbv12I GWGCWC 2 cut(s) 63, 177
BbvCI CCTCAGC 3 cut(s) 90, 111, 425
BbvI GCAGC 1 cut(s) 521
BccI CCATC 1 cut(s) 455
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 239, 302
BciVI GTATCC 1 cut(s) 458
BcoDI GTCTC 2 cut(s) 315, 511
BfaI CTAG 1 cut(s) 488
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 2 cut(s) 239, 302
Bme18I GGWCC 1 cut(s) 596
BmgT120I GGNCC 2 cut(s) 351, 596
BmiI GGNNCC 2 cut(s) 579, 598
BmrFI CCNGG 2 cut(s) 239, 302
BmrI ACTGGG 1 cut(s) 583
BmsI GCATC 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 583
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 3 cut(s) 90, 111, 425
BsaBI GATNNNNATC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 300, 582
BsaWI WCCGGW 1 cut(s) 340
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 510, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 535
Bse118I RCCGGY 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 578
Bse8I GATNNNNATC 1 cut(s) 146
BseBI CCWGG 2 cut(s) 239, 302
BseDI CCNNGG 2 cut(s) 300, 582
BseGI GGATG 1 cut(s) 466
BseJI GATNNNNATC 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 282, 535
BseMII CTCAG 7 cut(s) 81, 102, 129, 225, 255, 297, 416
BseNI ACTGG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 239
BshFI GGCC 2 cut(s) 336, 353
BshTI ACCGGT 1 cut(s) 340
BsiHKAI GWGCWC 2 cut(s) 63, 177
BsiSI CCGG 2 cut(s) 105, 341
BslI CCNNNNNNNGG 2 cut(s) 282, 535
BsmAI GTCTC 2 cut(s) 315, 511
BsnI GGCC 2 cut(s) 336, 353
Bsp1286I GDGCHC 4 cut(s) 63, 177, 288, 433
Bsp143I GATC 4 cut(s) 141, 561, 577, 616
BspANI GGCC 2 cut(s) 336, 353
BspCNI CTCAG 7 cut(s) 82, 103, 130, 224, 256, 298, 417
BspLI GGNNCC 2 cut(s) 579, 598
BspPI GGATC 2 cut(s) 572, 585
BsrFI RCCGGY 1 cut(s) 340
BsrI ACTGG 1 cut(s) 578
BssAI RCCGGY 1 cut(s) 340
BssECI CCNNGG 2 cut(s) 300, 582
BssMI GATC 4 cut(s) 141, 561, 577, 616
BssT1I CCWWGG 1 cut(s) 582
Bst2UI CCWGG 2 cut(s) 239, 302
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 218, 318
BstAPI GCANNNNNTGC 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 87, 355, 590
BstDEI CTNAG 8 cut(s) 90, 111, 138, 211, 264, 306, 425, 530
BstENI CCTNNNNNAGG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 466
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 135
BstKTI GATC 4 cut(s) 144, 564, 580, 619
BstMAI GTCTC 2 cut(s) 315, 511
BstMBI GATC 4 cut(s) 141, 561, 577, 616
BstMWI GCNNNNNNNGC 4 cut(s) 67, 105, 354, 437
BstNI CCWGG 2 cut(s) 239, 302
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 2 cut(s) 237, 300
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 521
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 2 cut(s) 336, 353
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 87, 355, 590
CaiI CAGNNNCTG 1 cut(s) 354
CfoI GCGC 2 cut(s) 110, 135
Cfr10I RCCGGY 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 351, 596
CseI GACGC 1 cut(s) 515
Csp6I GTAC 1 cut(s) 499
CspAI ACCGGT 1 cut(s) 340
CviAII CATG 5 cut(s) 379, 448, 469, 521, 601
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 8 cut(s) 90, 111, 138, 211, 264, 306, 425, 530
DpnI GATC 4 cut(s) 143, 563, 579, 618
DpnII GATC 4 cut(s) 141, 561, 577, 616
Eam1104I CTCTTC 2 cut(s) 218, 318
EarI CTCTTC 2 cut(s) 218, 318
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 582
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 2 cut(s) 63, 288
Eco47I GGWCC 1 cut(s) 596
Eco53kI GAGCTC 1 cut(s) 61
EcoICRI GAGCTC 1 cut(s) 61
EcoNI CCTNNNNNAGG 1 cut(s) 533
EcoO109I RGGNCCY 2 cut(s) 351, 596
EcoRII CCWGG 2 cut(s) 237, 300
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 2 cut(s) 63, 288
ErhI CCWWGG 1 cut(s) 582
FaeI CATG 5 cut(s) 382, 451, 472, 524, 604
FaiI YATR 9 cut(s) 146, 261, 360, 380, 449, 470, 522, 602, 638
FatI CATG 5 cut(s) 378, 447, 468, 520, 600
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 2 cut(s) 63, 288
Fsp4HI GCNGC 1 cut(s) 510
FspAI RTGCGCAY 1 cut(s) 134
FspBI CTAG 1 cut(s) 488
FspI TGCGCA 1 cut(s) 134
GlaI GCGC 2 cut(s) 109, 134
GluI GCNGC 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 2 cut(s) 336, 353
HapII CCGG 2 cut(s) 105, 341
HgaI GACGC 1 cut(s) 515
HhaI GCGC 2 cut(s) 110, 135
Hin1II CATG 5 cut(s) 382, 451, 472, 524, 604
Hin6I GCGC 2 cut(s) 108, 133
HinP1I GCGC 2 cut(s) 108, 133
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 4 cut(s) 157, 163, 308, 604
HpaII CCGG 2 cut(s) 105, 341
HphI GGTGA 1 cut(s) 418
Hpy188I TCNGA 4 cut(s) 75, 162, 179, 332
Hpy188III TCNNGA 2 cut(s) 559, 569
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 178, 183, 262
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 220, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 105, 354, 437
HpyF3I CTNAG 8 cut(s) 90, 111, 138, 211, 264, 306, 425, 530
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 5 cut(s) 382, 451, 472, 524, 604
HspAI GCGC 2 cut(s) 108, 133
Kzo9I GATC 4 cut(s) 141, 561, 577, 616
LmnI GCTCC 3 cut(s) 82, 202, 253
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 1 cut(s) 120
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 121, 622, 643
MalI GATC 4 cut(s) 143, 563, 579, 618
MboI GATC 4 cut(s) 141, 561, 577, 616
MboII GAAGA 4 cut(s) 43, 235, 305, 468
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 4 cut(s) 63, 177, 288, 433
MluCI AATT 3 cut(s) 633, 639, 650
MlyI GAGTC 4 cut(s) 151, 157, 317, 598
MseI TTAA 2 cut(s) 231, 552
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 105, 341
MspR9I CCNGG 2 cut(s) 239, 302
MvaI CCWGG 2 cut(s) 239, 302
MwoI GCNNNNNNNGC 4 cut(s) 67, 105, 354, 437
NdeII GATC 4 cut(s) 141, 561, 577, 616
NlaIII CATG 5 cut(s) 382, 451, 472, 524, 604
NlaIV GGNNCC 2 cut(s) 579, 598
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 643
NsbI TGCGCA 1 cut(s) 134
NspI RCATGY 1 cut(s) 524
PceI AGGCCT 1 cut(s) 336
PciI ACATGT 1 cut(s) 520
PfoI TCCNGGA 1 cut(s) 237
PinAI ACCGGT 1 cut(s) 340
PkrI GCNGC 1 cut(s) 511
PleI GAGTC 4 cut(s) 151, 157, 316, 598
PpsI GAGTC 4 cut(s) 151, 157, 316, 598
PpuMI RGGWCCY 1 cut(s) 596
PscI ACATGT 1 cut(s) 520
PsiI TTATAA 1 cut(s) 638
Psp124BI GAGCTC 1 cut(s) 63
Psp5II RGGWCCY 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 237, 300
PspGI CCWGG 2 cut(s) 237, 300
PspN4I GGNNCC 2 cut(s) 579, 598
PspPI GGNCC 2 cut(s) 351, 596
PspPPI RGGWCCY 1 cut(s) 596
PstNI CAGNNNCTG 1 cut(s) 354
PsuI RGATCY 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
SacI GAGCTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 231, 552
SatI GCNGC 1 cut(s) 510
Sau3AI GATC 4 cut(s) 141, 561, 577, 616
Sau96I GGNCC 2 cut(s) 351, 596
SchI GAGTC 4 cut(s) 151, 157, 317, 598
ScrFI CCNGG 2 cut(s) 239, 302
SduI GDGCHC 4 cut(s) 63, 177, 288, 433
SfaNI GCATC 1 cut(s) 120
SinI GGWCC 1 cut(s) 596
Sse9I AATT 3 cut(s) 633, 639, 650
SseBI AGGCCT 1 cut(s) 336
SspMI CTAG 1 cut(s) 488
SstI GAGCTC 1 cut(s) 63
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 237, 300
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 570
TasI AATT 3 cut(s) 633, 639, 650
TatI WGTACW 1 cut(s) 498
Tru1I TTAA 2 cut(s) 231, 552
Tru9I TTAA 2 cut(s) 231, 552
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 1 cut(s) 464
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 596
XagI CCTNNNNNAGG 1 cut(s) 533
XceI RCATGY 1 cut(s) 524
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.