Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003819.1

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Forward (+)

47414 .. 49557

Gene Structure 2144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003819.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atggcgacccagatgagcaagaagcgaaagttcgtcgccgacggtgttttcttcgccgagctcaacgagcttctgatgagggagctcgcggaggacggctactccggcgctgaggttagggttacgccgatgcgcactgagatcataatcagggcgactcggactcaaaacgtgctcggagagaagggaaggaggattagggagctgacctcagttgtgcagaagaggtttaagttcccggagaaaggtgtggagctttatgctgagaaggtagccaacagagggctctgctctactgcccaggctgagtctcttcgctacaagcttctcggaggcctaccggttcgcagggcctgctatggtgttttgagatttgtcatggaaagtggtgcaaagggttgtgaggtgattgttagtggaaagctgagggcacagagagccaagtccatgaagttcaaggacggatacatgatttcttctggtcagccagtcaatgagtacattgacgcagctgtgagacatgttctccttagacagggtgttcttggtattaaggtcaagatcatgctcgactgggatcccaagggaaagcaaggacccatgactcctctaccggatcttgttacaatccaccaaccaaaggatgatgagtttgtcaggcgggcaccagaaattgaagcagcacctattttggccccaactgatattgaggtcccagccatcccagccctcccagtggcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

247

Amino Acids

27.46

Weight (kDa)

9.63

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	664
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	89, 661
AclWI	GGATC	3 cut(s)	572, 585, 624
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	5 cut(s)	245, 282, 535, 640, 736
AflIII	ACRYGT	1 cut(s)	520
AgeI	ACCGGT	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	457, 677
AjnI	CCWGG	1 cut(s)	300
AluBI	AGCT	8 cut(s)	61, 70, 85, 205, 256, 325, 424, 512
AluI	AGCT	8 cut(s)	61, 70, 85, 205, 256, 325, 424, 512
Alw21I	GWGCWC	3 cut(s)	63, 87, 177
Alw26I	GTCTC	2 cut(s)	315, 511
AlwI	GGATC	3 cut(s)	572, 585, 624
AlwNI	CAGNNNCTG	1 cut(s)	354
AoxI	GGCC	3 cut(s)	334, 351, 693
ApeKI	GCWGC	2 cut(s)	509, 680
AsiGI	ACCGGT	1 cut(s)	340
AspLEI	GCGC	2 cut(s)	110, 135
AspS9I	GGNCC	4 cut(s)	351, 596, 694, 712
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	2 cut(s)	596, 712
BaeGI	GKGCMC	2 cut(s)	433, 667
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	664
BanII	GRGCYC	3 cut(s)	63, 87, 288
Bbv12I	GWGCWC	3 cut(s)	63, 87, 177
BbvCI	CCTCAGC	2 cut(s)	111, 425
BbvI	GCAGC	2 cut(s)	521, 692
BccI	CCATC	1 cut(s)	728
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	302
BciVI	GTATCC	1 cut(s)	458
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	315, 511
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	458
BisI	GCNGC	2 cut(s)	510, 681
BlsI	GCNGC	2 cut(s)	511, 682
Bme1390I	CCNGG	2 cut(s)	239, 302
Bme18I	GGWCC	2 cut(s)	596, 712
BmgT120I	GGNCC	4 cut(s)	351, 596, 694, 712
BmiI	GGNNCC	5 cut(s)	579, 598, 666, 696, 714
BmrFI	CCNGG	2 cut(s)	239, 302
BmrI	ACTGGG	2 cut(s)	583, 728
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	2 cut(s)	583, 728
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
Bpu10I	CCTNAGC	2 cut(s)	111, 425
BpuMI	CCSGG	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	300, 582
BsaWI	WCCGGW	2 cut(s)	340, 613
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 510, 540
Bsc4I	CCNNNNNNNGG	5 cut(s)	245, 282, 535, 640, 736
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	3 cut(s)	488, 578, 734
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	302
BseDI	CCNNGG	2 cut(s)	300, 582
BseGI	GGATG	2 cut(s)	649, 720
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	5 cut(s)	245, 282, 535, 640, 736
BseMII	CTCAG	6 cut(s)	102, 129, 225, 255, 297, 416
BseNI	ACTGG	3 cut(s)	488, 578, 734
BseRI	GAGGAG	1 cut(s)	597
BseSI	GKGCMC	2 cut(s)	433, 667
BseXI	GCAGC	2 cut(s)	521, 692
BseYI	CCCAGC	2 cut(s)	715, 724
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	336, 353, 695
BshNI	GGYRCC	1 cut(s)	664
BshTI	ACCGGT	1 cut(s)	340
BsiHKAI	GWGCWC	3 cut(s)	63, 87, 177
BsiSI	CCGG	4 cut(s)	105, 239, 341, 614
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	5 cut(s)	245, 282, 535, 640, 736
BsmAI	GTCTC	2 cut(s)	315, 511
BsmFI	GGGAC	1 cut(s)	698
BsnI	GGCC	3 cut(s)	336, 353, 695
Bsp1286I	GDGCHC	6 cut(s)	63, 87, 177, 288, 433, 667
Bsp143I	GATC	4 cut(s)	141, 561, 577, 616
BspACI	CCGC	2 cut(s)	89, 661
BspANI	GGCC	3 cut(s)	336, 353, 695
BspCNI	CTCAG	6 cut(s)	103, 130, 224, 256, 298, 417
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	5 cut(s)	579, 598, 666, 696, 714
BspPI	GGATC	3 cut(s)	572, 585, 624
BspT107I	GGYRCC	1 cut(s)	664
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	3 cut(s)	488, 578, 734
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	300, 582
BssMI	GATC	4 cut(s)	141, 561, 577, 616
BssT1I	CCWWGG	1 cut(s)	582
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	2 cut(s)	218, 318
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	87, 355, 663
BstDEI	CTNAG	7 cut(s)	111, 138, 211, 264, 306, 425, 530
BstENI	CCTNNNNNAGG	1 cut(s)	533
BstF5I	GGATG	2 cut(s)	649, 720
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 135
BstKTI	GATC	4 cut(s)	144, 564, 580, 619
BstMAI	GTCTC	2 cut(s)	315, 511
BstMBI	GATC	4 cut(s)	141, 561, 577, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 105, 354, 437, 725
BstNI	CCWGG	1 cut(s)	302
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	237, 300
BstSLI	GKGCMC	2 cut(s)	433, 667
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	521, 692
BstX2I	RGATCY	2 cut(s)	577, 616
BstYI	RGATCY	2 cut(s)	577, 616
BsuI	GTATCC	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	336, 353, 695
BtsCI	GGATG	2 cut(s)	649, 720
BtsIMutI	CAGTG	2 cut(s)	135, 741
Cac8I	GCNNGC	3 cut(s)	87, 355, 663
CaiI	CAGNNNCTG	1 cut(s)	354
CfoI	GCGC	2 cut(s)	110, 135
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	4 cut(s)	351, 596, 694, 712
CseI	GACGC	1 cut(s)	515
Csp6I	GTAC	1 cut(s)	499
CspAI	ACCGGT	1 cut(s)	340
CviAII	CATG	6 cut(s)	379, 448, 469, 521, 565, 601
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	7 cut(s)	111, 138, 211, 264, 306, 425, 530
DpnI	GATC	4 cut(s)	143, 563, 579, 618
DpnII	GATC	4 cut(s)	141, 561, 577, 616
Eam1104I	CTCTTC	2 cut(s)	218, 318
EarI	CTCTTC	2 cut(s)	218, 318
Ecl136II	GAGCTC	2 cut(s)	61, 85
Eco130I	CCWWGG	1 cut(s)	582
Eco147I	AGGCCT	1 cut(s)	336
Eco24I	GRGCYC	3 cut(s)	63, 87, 288
Eco47I	GGWCC	2 cut(s)	596, 712
Eco53kI	GAGCTC	2 cut(s)	61, 85
EcoICRI	GAGCTC	2 cut(s)	61, 85
EcoNI	CCTNNNNNAGG	1 cut(s)	533
EcoO109I	RGGNCCY	3 cut(s)	351, 596, 712
EcoRII	CCWGG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	582
EcoT38I	GRGCYC	3 cut(s)	63, 87, 288
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	6 cut(s)	382, 451, 472, 524, 568, 604
FaiI	YATR	9 cut(s)	146, 261, 360, 380, 449, 470, 522, 566, 602
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	6 cut(s)	378, 447, 468, 520, 564, 600
FauI	CCCGC	1 cut(s)	654
Fnu4HI	GCNGC	2 cut(s)	510, 681
FokI	GGATG	2 cut(s)	656, 707
FriOI	GRGCYC	3 cut(s)	63, 87, 288
Fsp4HI	GCNGC	2 cut(s)	510, 681
FspAI	RTGCGCAY	1 cut(s)	134
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	2 cut(s)	109, 134
GluI	GCNGC	2 cut(s)	510, 681
GsaI	CCCAGC	2 cut(s)	719, 728
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	336, 353, 695
HapII	CCGG	4 cut(s)	105, 239, 341, 614
HgaI	GACGC	1 cut(s)	515
HhaI	GCGC	2 cut(s)	110, 135
Hin1II	CATG	6 cut(s)	382, 451, 472, 524, 568, 604
Hin6I	GCGC	2 cut(s)	108, 133
HinP1I	GCGC	2 cut(s)	108, 133
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	4 cut(s)	157, 163, 308, 604
HpaII	CCGG	4 cut(s)	105, 239, 341, 614
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	75, 162, 179, 332
Hpy188III	TCNNGA	1 cut(s)	559
Hpy99I	CGWCG	2 cut(s)	38, 44
HpyAV	CCTTC	3 cut(s)	178, 183, 262
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	220, 392
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 105, 354, 437, 725
HpyF3I	CTNAG	7 cut(s)	111, 138, 211, 264, 306, 425, 530
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	6 cut(s)	382, 451, 472, 524, 568, 604
HspAI	GCGC	2 cut(s)	108, 133
Kzo9I	GATC	4 cut(s)	141, 561, 577, 616
LmnI	GCTCC	3 cut(s)	82, 202, 253
Lsp1109I	GCAGC	2 cut(s)	521, 692
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	121, 622
MalI	GATC	4 cut(s)	143, 563, 579, 618
MboI	GATC	4 cut(s)	141, 561, 577, 616
MboII	GAAGA	4 cut(s)	43, 235, 305, 468
MflI	RGATCY	2 cut(s)	577, 616
MhlI	GDGCHC	6 cut(s)	63, 87, 177, 288, 433, 667
MluCI	AATT	1 cut(s)	672
MlyI	GAGTC	4 cut(s)	151, 157, 317, 598
MseI	TTAA	3 cut(s)	231, 552, 742
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	4 cut(s)	105, 239, 341, 614
MspR9I	CCNGG	2 cut(s)	239, 302
MvaI	CCWGG	1 cut(s)	302
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	67, 105, 354, 437, 725
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	4 cut(s)	141, 561, 577, 616
NlaIII	CATG	6 cut(s)	382, 451, 472, 524, 568, 604
NlaIV	GGNNCC	5 cut(s)	579, 598, 666, 696, 714
NmeAIII	GCCGAG	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	134
NspI	RCATGY	1 cut(s)	524
PceI	AGGCCT	1 cut(s)	336
PciI	ACATGT	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	237
PinAI	ACCGGT	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	511, 682
PleI	GAGTC	4 cut(s)	151, 157, 316, 598
PpsI	GAGTC	4 cut(s)	151, 157, 316, 598
PpuMI	RGGWCCY	2 cut(s)	596, 712
PscI	ACATGT	1 cut(s)	520
Psp124BI	GAGCTC	2 cut(s)	63, 87
Psp5II	RGGWCCY	2 cut(s)	596, 712
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	2 cut(s)	715, 724
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	5 cut(s)	579, 598, 666, 696, 714
PspPI	GGNCC	4 cut(s)	351, 596, 694, 712
PspPPI	RGGWCCY	2 cut(s)	596, 712
PstNI	CAGNNNCTG	1 cut(s)	354
PsuI	RGATCY	2 cut(s)	577, 616
PvuII	CAGCTG	1 cut(s)	512
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SacI	GAGCTC	2 cut(s)	63, 87
SaqAI	TTAA	3 cut(s)	231, 552, 742
SatI	GCNGC	2 cut(s)	510, 681
Sau3AI	GATC	4 cut(s)	141, 561, 577, 616
Sau96I	GGNCC	4 cut(s)	351, 596, 694, 712
SchI	GAGTC	4 cut(s)	151, 157, 317, 598
ScrFI	CCNGG	2 cut(s)	239, 302
SduI	GDGCHC	6 cut(s)	63, 87, 177, 288, 433, 667
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	2 cut(s)	596, 712
Sse9I	AATT	1 cut(s)	672
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	89, 661
SstI	GAGCTC	2 cut(s)	63, 87
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	237, 300
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	570
TasI	AATT	1 cut(s)	672
TatI	WGTACW	1 cut(s)	498
Tru1I	TTAA	3 cut(s)	231, 552, 742
Tru9I	TTAA	3 cut(s)	231, 552, 742
TscAI	CASTG	2 cut(s)	142, 741
TseI	GCWGC	2 cut(s)	509, 680
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	142, 741
VpaK11BI	GGWCC	2 cut(s)	596, 712
XagI	CCTNNNNNAGG	1 cut(s)	533
XceI	RCATGY	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.