Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Reverse (-)

58491133 .. 58493955

Gene Structure 2823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG430000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCTGCTCAGTTGAGGTTATGCTGGTGCCGACCTGGATCATCGTTAGGGCCACTCGGACTCGGTGAGAAGGGAAAGAGATTAAAGGAACTTACATCTGTTGTTCAGAAGCGTTTCAATTTTCCGGAGAAAAGTGTTGAGCTTTATGCAGAGAAAGTTAACAACCGAGGGCTTTGTGCAATTGCTCAGGCAGAGTCTTTGTGTTACAAGCTTCTAGGAGGGCTTGCTGTCTGCAGGTTCTTGAGATTAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003735 GO:0003824 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0008150 GO:0008152 GO:0008534 GO:0009058 GO:0009059 GO:0009506 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

84

Amino Acids

9.36

Weight (kDa)

9.82

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	124
AclWI	GGATC	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	142, 211
AluI	AGCT	2 cut(s)	142, 211
AlwI	GGATC	1 cut(s)	46
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	77
BanI	GGYRCC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	36
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	225
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	124
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	23, 200
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	125
BsnI	GGCC	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	2 cut(s)	22, 199
BspEI	TCCGGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	29
BspMAI	CTGCAG	1 cut(s)	236
BspMI	ACCTGC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	9, 186
BstKTI	GATC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	52
BveI	ACCTGC	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	1 cut(s)	50
CviJI	RGCY	6 cut(s)	5, 52, 142, 172, 211, 223
CviKI_1	RGCY	6 cut(s)	5, 52, 142, 172, 211, 223
DdeI	CTNAG	2 cut(s)	9, 186
DpnI	GATC	1 cut(s)	40
DpnII	GATC	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	34
FaiI	YATR	2 cut(s)	22, 147
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	60, 194
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	59, 108
Hpy188III	TCNNGA	2 cut(s)	125, 241
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	3 cut(s)	149, 179, 234
HpyF3I	CTNAG	2 cut(s)	9, 186
Kpn2I	TCCGGA	1 cut(s)	124
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	38
LpnPI	CCDG	6 cut(s)	10, 21, 48, 138, 173, 220
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	40
MboI	GATC	1 cut(s)	38
MfeI	CAATTG	1 cut(s)	180
MluCI	AATT	2 cut(s)	118, 180
MlyI	GAGTC	2 cut(s)	54, 203
MnlI	CCTC	3 cut(s)	9, 161, 212
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	3 cut(s)	83, 159, 248
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	36
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	38
NlaIV	GGNNCC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	113
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	54, 202
PpsI	GAGTC	2 cut(s)	54, 202
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	83, 159, 248
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	38
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	2 cut(s)	54, 203
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	6 cut(s)	20, 37, 144, 213, 239, 254
SfcI	CTRYAG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	2 cut(s)	118, 180
SspMI	CTAG	1 cut(s)	215
StyD4I	CCNGG	1 cut(s)	34
TasI	AATT	2 cut(s)	118, 180
Tru1I	TTAA	3 cut(s)	83, 159, 248
Tru9I	TTAA	3 cut(s)	83, 159, 248
TseI	GCWGC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.