Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Forward (+)

21571556 .. 21573308

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g29220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGGATCTTCTCCTTCACTGCTTAGTCTGATGTTGCCTCAATGTGGGCCTGTCCTGAGTCGGTTCGTCGCTGACGGCGTTTTCTTCGCCGAGGACGGCTACTCCGGCGCGGAGGTTAGGGTTACGCCGATGCGCACTGAGATCATAATCAGGGCTACCAGGACTCAAAACGTGCTCGGAGAGAAGGGGAGGAGGATTAGGGAGCTGACCTCAGTTGTGCAGAAGAGGTTCAAGTTCCCTGAGAAGGGTGTGGAGCTTTATGCTGAGAAGGTCGCCAACAGAGGGCTTTGCTCTACTGCTCAGGCCGAGTCTCTCCGATACAAGCTTCTCGGAGGCCTACCTGTTCGCAGGGCTTGCTATGGTGTTTTAAGATTTGTCATGGAAAGTGGCGCAAAGGGTTGTGAGGTGATTGTTAGTGGTGGAAAGCTGAGGGCACAGAGAGCCAAGGCCATGAAGTTCGAGGATGGCTACATGATTTCTTCTGGTCAGCCAGCGAATGAGTACATTGACTCAGCTGTGAGACATGTTCTCCTCAGACAGGGTGTTCTTGGTATCAAGGTCAAGATTATGCTTGACTGGGATCCCAAGGGCAAGCAAGGACCCATGACTCCTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

206

Amino Acids

22.53

Weight (kDa)

9.86

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	30 - 94	2.3e-12	KH domain
Ribosomal_S3_C	PF00189	106 - 189	7.5e-24	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	134
AccII	CGCG	1 cut(s)	110
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	3 cut(s)	13, 575, 588
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	5 cut(s)	44, 244, 245, 282, 538
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	5 cut(s)	205, 256, 325, 427, 515
AluI	AGCT	5 cut(s)	205, 256, 325, 427, 515
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	315, 514
AlwI	GGATC	3 cut(s)	13, 575, 588
AoxI	GGCC	4 cut(s)	47, 303, 334, 447
Asp700I	GAANNNNTTC	1 cut(s)	227
AspLEI	GCGC	3 cut(s)	110, 135, 392
AspS9I	GGNCC	2 cut(s)	47, 599
AsuHPI	GGTGA	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	580
Bbv12I	GWGCWC	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	428
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	2 cut(s)	91, 112
BciT130I	CCWGG	1 cut(s)	160
BcoDI	GTCTC	2 cut(s)	315, 514
Bme1390I	CCNGG	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	599
BmgT120I	GGNCC	2 cut(s)	47, 599
BmiI	GGNNCC	2 cut(s)	582, 601
BmrFI	CCNGG	1 cut(s)	160
BmrI	ACTGGG	1 cut(s)	586
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	586
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
Bpu10I	CCTNAGC	2 cut(s)	300, 428
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	90, 444, 585
BsaXI	ACNNNNNCTCC	4 cut(s)	86, 116, 513, 543
Bsc4I	CCNNNNNNNGG	5 cut(s)	44, 244, 245, 282, 538
Bse1I	ACTGG	1 cut(s)	581
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	3 cut(s)	90, 444, 585
BseGI	GGATG	1 cut(s)	469
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	5 cut(s)	44, 244, 245, 282, 538
BseMII	CTCAG	9 cut(s)	47, 129, 225, 231, 255, 314, 419, 525, 547
BseNI	ACTGG	1 cut(s)	581
BseRI	GAGGAG	2 cut(s)	205, 521
BseSI	GKGCMC	1 cut(s)	436
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	110
BshFI	GGCC	4 cut(s)	49, 305, 336, 449
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	5 cut(s)	44, 244, 245, 282, 538
BsmAI	GTCTC	2 cut(s)	315, 514
BsnI	GGCC	4 cut(s)	49, 305, 336, 449
Bsp1286I	GDGCHC	2 cut(s)	177, 436
Bsp143I	GATC	3 cut(s)	5, 141, 580
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	4 cut(s)	49, 305, 336, 449
BspCNI	CTCAG	9 cut(s)	48, 130, 224, 232, 256, 313, 420, 524, 546
BspFNI	CGCG	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	582, 601
BspPI	GGATC	3 cut(s)	13, 575, 588
BsrI	ACTGG	1 cut(s)	581
BssECI	CCNNGG	3 cut(s)	90, 444, 585
BssMI	GATC	3 cut(s)	5, 141, 580
BssT1I	CCWWGG	2 cut(s)	444, 585
Bst2UI	CCWGG	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	355, 492, 593
BstENI	CCTNNNNNAGG	1 cut(s)	536
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	110
BstHHI	GCGC	3 cut(s)	110, 135, 392
BstKTI	GATC	3 cut(s)	8, 144, 583
BstMAI	GTCTC	2 cut(s)	315, 514
BstMBI	GATC	3 cut(s)	5, 141, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 354, 440
BstNI	CCWGG	1 cut(s)	160
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	158
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	5, 580
BstYI	RGATCY	2 cut(s)	5, 580
BsuRI	GGCC	4 cut(s)	49, 305, 336, 449
BtsCI	GGATG	1 cut(s)	469
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	2 cut(s)	17, 135
Cac8I	GCNNGC	3 cut(s)	355, 492, 593
CfoI	GCGC	3 cut(s)	110, 135, 392
Cfr13I	GGNCC	2 cut(s)	47, 599
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	5 cut(s)	379, 451, 472, 524, 604
CviQI	GTAC	1 cut(s)	502
DpnI	GATC	3 cut(s)	7, 143, 582
DpnII	GATC	3 cut(s)	5, 141, 580
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	444, 585
Eco147I	AGGCCT	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	599
EcoNI	CCTNNNNNAGG	1 cut(s)	536
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	444, 585
ErhI	CCWWGG	2 cut(s)	444, 585
FaeI	CATG	5 cut(s)	382, 454, 475, 527, 607
FaiI	YATR	9 cut(s)	146, 261, 360, 380, 452, 473, 525, 569, 605
FatI	CATG	5 cut(s)	378, 450, 471, 523, 603
FokI	GGATG	1 cut(s)	476
FspAI	RTGCGCAY	1 cut(s)	134
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	3 cut(s)	109, 134, 391
HaeIII	GGCC	4 cut(s)	49, 305, 336, 449
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	3 cut(s)	110, 135, 392
Hin1II	CATG	5 cut(s)	382, 454, 475, 527, 607
Hin6I	GCGC	3 cut(s)	108, 133, 390
HinP1I	GCGC	3 cut(s)	108, 133, 390
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	5 cut(s)	58, 163, 308, 509, 607
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	418
Hpy188I	TCNGA	5 cut(s)	30, 179, 317, 332, 536
Hpy188III	TCNNGA	2 cut(s)	55, 562
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	4 cut(s)	24, 178, 238, 262
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 354, 440
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	382, 454, 475, 527, 607
HspAI	GCGC	3 cut(s)	108, 133, 390
Kzo9I	GATC	3 cut(s)	5, 141, 580
LmnI	GCTCC	2 cut(s)	202, 253
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	3 cut(s)	7, 143, 582
MboI	GATC	3 cut(s)	5, 141, 580
MboII	GAAGA	3 cut(s)	76, 235, 471
MflI	RGATCY	2 cut(s)	5, 580
MhlI	GDGCHC	2 cut(s)	177, 436
MlyI	GAGTC	5 cut(s)	67, 157, 317, 503, 601
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	160
MvnI	CGCG	1 cut(s)	110
MwoI	GCNNNNNNNGC	3 cut(s)	105, 354, 440
NdeII	GATC	3 cut(s)	5, 141, 580
NlaIII	CATG	5 cut(s)	382, 454, 475, 527, 607
NlaIV	GGNNCC	2 cut(s)	582, 601
NmeAIII	GCCGAG	2 cut(s)	115, 331
NsbI	TGCGCA	1 cut(s)	134
NspI	RCATGY	1 cut(s)	527
PceI	AGGCCT	1 cut(s)	336
PciI	ACATGT	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	227
PleI	GAGTC	5 cut(s)	66, 157, 316, 503, 601
PpsI	GAGTC	5 cut(s)	66, 157, 316, 503, 601
PpuMI	RGGWCCY	1 cut(s)	599
PscI	ACATGT	1 cut(s)	523
Psp5II	RGGWCCY	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	582, 601
PspPI	GGNCC	2 cut(s)	47, 599
PspPPI	RGGWCCY	1 cut(s)	599
PsuI	RGATCY	2 cut(s)	5, 580
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	368
Sau3AI	GATC	3 cut(s)	5, 141, 580
Sau96I	GGNCC	2 cut(s)	47, 599
SchI	GAGTC	5 cut(s)	67, 157, 317, 503, 601
ScrFI	CCNGG	1 cut(s)	160
SduI	GDGCHC	2 cut(s)	177, 436
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	599
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	110
StuI	AGGCCT	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	158
StyI	CCWWGG	2 cut(s)	444, 585
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	459
TatI	WGTACW	1 cut(s)	501
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TscAI	CASTG	2 cut(s)	24, 142
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	2 cut(s)	24, 142
VpaK11BI	GGWCC	1 cut(s)	599
XagI	CCTNNNNNAGG	1 cut(s)	536
XceI	RCATGY	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.