Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Forward (+)

19951424 .. 19953018

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACGACTCAGATCAGCAAGAAGAGAAAGTTTGTAGCGGACGGTGTGTTCTACGCTGAATTGAATGAGGTTCTTACAAGAGAGCTAGCAGAGGATGGTTACTCTGGTGTTGAGGTTAGGGTTACTCCTATGAGGACTGAGATTATCATCAGAGCTACACGTACTCAGAATGTTCTCGGTGAGAAGGGGAGGAGAATTAGGGAATTGACTTCCCTTGTTCAGAAGAGATTCAAGTTTCCAGTTGACAGTGTTGAGCTTTATGCCGAGAAGGTTAACAACAGAGGTCTCTGTGCCATCGCTCAGGCTGAGTCTTTACGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGTAGGGCTTGCTATGGTGTGTTGAGGTTTGTTATGGAGAGTGGAGCTAAGGGATGCGAGGTTATCGTGAGTGGAAAGCTTCGTGCTGCCAGAGCCAAGTCTATGAAGTTCAAAGATGGCTACATGGTGTCATCTGGTCAACCAACTAAGGAATACATAGACTCTGCAGTGAGACATGTTTTGCTTAGACAAGGTGTGTTGGGAATCAAGGTGAAGGTTATGCTTGATTGGGACCCTAAGGGCATATCAGGACCAAAGACACCATTGCCTGATGTTGTGATCATTCATTCTCCTAAAGAAGAAGAGGCCATCTATGCACCTGCTCAGGTTGCTGCCCCGGCTGCTCTCGTAGCAGATGCACCACTCACAGCCGTAGATTACCCTGCGATGATCCCAGTCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0003729 GO:0003735 GO:0003824 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0008150 GO:0008152 GO:0008534 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

249

Amino Acids

27.35

Weight (kDa)

9.57

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	20 - 94	1.7e-14	KH domain
Ribosomal_S3_C	PF00189	106 - 188	1.5e-25	Ribosomal protein S3, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	1 cut(s)	673
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	730
AfaI	GTAC	1 cut(s)	163
AflIII	ACRYGT	2 cut(s)	158, 520
AgsI	TTSAA	3 cut(s)	64, 232, 457
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	6 cut(s)	85, 155, 256, 325, 392, 424
AluI	AGCT	6 cut(s)	85, 155, 256, 325, 392, 424
Alw26I	GTCTC	3 cut(s)	290, 341, 511
AlwI	GGATC	1 cut(s)	730
AoxI	GGCC	1 cut(s)	651
ApeKI	GCWGC	3 cut(s)	431, 677, 686
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	577, 596
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	2 cut(s)	191, 568
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	2 cut(s)	577, 596
AxyI	CCTNAGG	1 cut(s)	582
BbvI	GCAGC	3 cut(s)	418, 664, 673
BccI	CCATC	4 cut(s)	89, 302, 455, 662
BceAI	ACGGC	1 cut(s)	701
BclI	TGATCA	1 cut(s)	624
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	3 cut(s)	290, 341, 511
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	510
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	3 cut(s)	432, 678, 687
BlsI	GCNGC	3 cut(s)	433, 679, 688
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	2 cut(s)	577, 596
BmgT120I	GGNCC	2 cut(s)	577, 596
BmiI	GGNNCC	2 cut(s)	578, 579
BmrFI	CCNGG	1 cut(s)	683
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	2 cut(s)	389, 691
BmtI	GCTAGC	1 cut(s)	89
BmuI	ACTGGG	1 cut(s)	734
Bpu10I	CCTNAGC	3 cut(s)	300, 393, 669
BpuMI	CCSGG	1 cut(s)	683
BsaAI	YACGTR	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	146
BsaI	GGTCTC	2 cut(s)	290, 341
BsaJI	CCNNGG	1 cut(s)	681
Bse1I	ACTGG	2 cut(s)	239, 740
Bse21I	CCTNAGG	1 cut(s)	582
Bse3DI	GCAATG	1 cut(s)	608
Bse8I	GATNNNNATC	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	681
BseGI	GGATG	2 cut(s)	100, 404
BseJI	GATNNNNATC	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	608
BseMII	CTCAG	6 cut(s)	23, 129, 179, 297, 314, 683
BseNI	ACTGG	2 cut(s)	239, 740
BseRI	GAGGAG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	418, 664, 673
BshFI	GGCC	1 cut(s)	653
BsiSI	CCGG	1 cut(s)	683
BslFI	GGGAC	1 cut(s)	590
BsmAI	GTCTC	3 cut(s)	290, 341, 511
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	1 cut(s)	653
Bso31I	GGTCTC	2 cut(s)	290, 341
Bsp143I	GATC	3 cut(s)	12, 624, 735
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	653
BspCNI	CTCAG	6 cut(s)	22, 130, 178, 298, 313, 682
BspLI	GGNNCC	2 cut(s)	578, 579
BspMAI	CTGCAG	1 cut(s)	514
BspMI	ACCTGC	1 cut(s)	673
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	730
BspTNI	GGTCTC	2 cut(s)	290, 341
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	2 cut(s)	239, 740
BssECI	CCNNGG	1 cut(s)	681
BssMI	GATC	3 cut(s)	12, 624, 735
Bst4CI	ACNGT	2 cut(s)	44, 248
Bst6I	CTCTTC	3 cut(s)	17, 218, 642
BstBAI	YACGTR	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	87, 355
BstF5I	GGATG	2 cut(s)	100, 404
BstKTI	GATC	3 cut(s)	15, 627, 738
BstMAI	GTCTC	3 cut(s)	290, 341, 511
BstMBI	GATC	3 cut(s)	12, 624, 735
BstMWI	GCNNNNNNNGC	6 cut(s)	437, 659, 674, 683, 686, 695
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	1 cut(s)	510
BstV1I	GCAGC	3 cut(s)	418, 664, 673
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	1 cut(s)	653
BtgZI	GCGATG	2 cut(s)	280, 746
BtsCI	GGATG	2 cut(s)	100, 404
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	253, 519
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	87, 355
Cfr13I	GGNCC	2 cut(s)	577, 596
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	469, 521
CviQI	GTAC	1 cut(s)	162
DpnI	GATC	3 cut(s)	14, 626, 737
DpnII	GATC	3 cut(s)	12, 624, 735
Eam1104I	CTCTTC	3 cut(s)	17, 218, 642
EarI	CTCTTC	3 cut(s)	17, 218, 642
Eco31I	GGTCTC	2 cut(s)	290, 341
Eco47I	GGWCC	2 cut(s)	577, 596
Eco81I	CCTNAGG	1 cut(s)	582
EcoO109I	RGGNCCY	1 cut(s)	577
FaeI	CATG	2 cut(s)	472, 524
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	2 cut(s)	468, 520
FbaI	TGATCA	1 cut(s)	624
Fnu4HI	GCNGC	3 cut(s)	432, 678, 687
FokI	GGATG	2 cut(s)	107, 411
Fsp4HI	GCNGC	3 cut(s)	432, 678, 687
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	3 cut(s)	432, 678, 687
HaeIII	GGCC	1 cut(s)	653
HapII	CCGG	1 cut(s)	683
Hin1II	CATG	2 cut(s)	472, 524
HincII	GTYRAC	3 cut(s)	244, 274, 485
HindII	GTYRAC	3 cut(s)	244, 274, 485
HindIII	AAGCTT	2 cut(s)	323, 422
HinfI	GANTC	5 cut(s)	7, 228, 308, 506, 549
HpaI	GTTAAC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	683
HphI	GGTGA	2 cut(s)	191, 568
Hpy166II	GTNNAC	3 cut(s)	244, 274, 485
Hpy188I	TCNGA	4 cut(s)	12, 152, 168, 222
Hpy188III	TCNNGA	2 cut(s)	412, 594
Hpy8I	GTNNAC	3 cut(s)	244, 274, 485
HpyAV	CCTTC	3 cut(s)	178, 262, 553
HpyCH4III	ACNGT	2 cut(s)	44, 248
HpyCH4IV	ACGT	2 cut(s)	160, 316
HpyCH4V	TGCA	3 cut(s)	512, 662, 704
HpyF10VI	GCNNNNNNNGC	6 cut(s)	437, 659, 674, 683, 686, 695
HpySE526I	ACGT	2 cut(s)	160, 316
Hsp92II	CATG	2 cut(s)	472, 524
KflI	GGGWCCC	1 cut(s)	577
Ksp22I	TGATCA	1 cut(s)	624
KspAI	GTTAAC	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	12, 624, 735
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	3 cut(s)	418, 664, 673
LweI	GCATC	2 cut(s)	389, 691
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	160, 316
MaeIII	GTNAC	3 cut(s)	98, 121, 317
MalI	GATC	3 cut(s)	14, 626, 737
MboI	GATC	3 cut(s)	12, 624, 735
MboII	GAAGA	4 cut(s)	34, 235, 656, 659
MluCI	AATT	3 cut(s)	59, 195, 203
MlyI	GAGTC	2 cut(s)	317, 500
MnlI	CCTC	9 cut(s)	61, 85, 106, 126, 183, 275, 363, 397, 643
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	273
MspI	CCGG	1 cut(s)	683
MspR9I	CCNGG	1 cut(s)	683
MwoI	GCNNNNNNNGC	6 cut(s)	437, 659, 674, 683, 686, 695
NciI	CCSGG	1 cut(s)	683
NdeII	GATC	3 cut(s)	12, 624, 735
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	472, 524
NlaIV	GGNNCC	2 cut(s)	578, 579
NmeAIII	GCCGAG	1 cut(s)	289
NspI	RCATGY	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	673
PciI	ACATGT	1 cut(s)	520
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	228, 549
PkrI	GCNGC	3 cut(s)	433, 679, 688
PleI	GAGTC	2 cut(s)	316, 500
PpsI	GAGTC	2 cut(s)	316, 500
Ppu21I	YACGTR	1 cut(s)	161
PpuMI	RGGWCCY	1 cut(s)	577
PscI	ACATGT	1 cut(s)	520
Psp5II	RGGWCCY	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	578, 579
PspPI	GGNCC	2 cut(s)	577, 596
PspPPI	RGGWCCY	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	514
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	432, 678, 687
Sau3AI	GATC	3 cut(s)	12, 624, 735
Sau96I	GGNCC	2 cut(s)	577, 596
SchI	GAGTC	2 cut(s)	317, 500
ScrFI	CCNGG	1 cut(s)	683
SfaNI	GCATC	2 cut(s)	389, 691
SfcI	CTRYAG	1 cut(s)	510
SinI	GGWCC	2 cut(s)	577, 596
Sse9I	AATT	3 cut(s)	59, 195, 203
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	681
TaaI	ACNGT	2 cut(s)	44, 248
TaiI	ACGT	2 cut(s)	163, 319
TasI	AATT	3 cut(s)	59, 195, 203
TfiI	GAWTC	2 cut(s)	228, 549
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	253, 519
TseI	GCWGC	3 cut(s)	431, 677, 686
TspDTI	ATGAA	2 cut(s)	464, 620
TspRI	CASTG	2 cut(s)	253, 519
VpaK11BI	GGWCC	2 cut(s)	577, 596
XceI	RCATGY	1 cut(s)	524
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.