Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001560

Physical Location & Seq

Genomic Coordinates Reverse (-)

4858813 .. 4861212

Gene Structure 2400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07010.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTACTCCGGCGTTGAAGTTAGGGTTACGCCGATGCGAACCGAGATCGATCATCCGAGCCACCCGAACCCAAAACGTTCTCGGAGAGAAGGGGAGGAGGATTAGGGAGCTAACCTCTGCTGTACAGAAGCGGTTTAAGTTTCCGGAAAACAGCGTTGAGCTTTACGCTGAGAAGGTTAACAACAGAGGGCTGTGCGCTATTGCTCAGGCCGAGTCTCTCCGTTACAAGCTTCTCGGTGGCCTTGCCGTCCGCAGGGCTTGCTACGGTGTTTTGAGATTCGTCATGGAAAGTGGAGCAAAGGGTTGTGAGGTGATCATTAGTGGAAAGCTAAGAGCTGCACGAGCCAAGTCCATGAAGTTCAAAGACGGATACATGATTTCTTCTGGTCAGCCAGTCAATGAATACATTGATTCTGCTGTGAGGCACGTCCTCCTTAGACAGGGTGTGCTTGGTATTAAGGTCAAGATTATGCTCGATTGGGATCCCAAGGGCAAGCAAGGCCCCAAGACCCCCTTACCCGACCTTGTTACAATTCACCAACCGAAGGAGGACGTATATATCAGGCCGGCACTAGCTGCCCCTGTTGCAGAGCCTTTTTTGGCCCCGACTGAGGTCGAGGCCCCAGTCCCGATTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

215

Amino Acids

23.62

Weight (kDa)

9.98

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001560)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31610 AT3G53870 AT5G35530
fragaria_vesca	FvH4_1g08300 FvH4_2g31150 FvH4_7g29220
malus_domestica	MD02G1087300.v1.1 MD08G1070300.v1.1 MD10G1087800.v1.1 MD15G1051900.v1.1 MD15G1214900.v1.1
prunus_persica	Prupe.1G405800_v2.0.a1 Prupe.7G202300_v2.0.a1 Prupe.7G202300_v2.0.a1
pyrus_communis	pycom02g07010 pycom12419g00220 pycom15g04960 pycom15g19070
rosa_chinensis	RchiOBHm_Chr2g0094371 RchiOBHm_Chr2g0171721 RchiOBHm_Chr6g0311621
rosa_laevigata	RLG00000010386
rosa_multiflora	Rmu_co8378567.1_g000001 Rmu_sc0000317.1_g000002 Rmu_sc0002506.1_g000024 Rmu_sc0003819.1_g000013 Rmu_sc0024567.1_g000001 Rmu_sc0039032.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147180 Rroxscaffold_7G00157430
rosa_rugosa	Rorug01G0324900 Rorug02G0043700 Rorug05G0144600 Rorug06G0390100
rosa_samantha	Rh2AG091500 Rh2AG443000 Rh2BG091500 Rh2BG641500 Rh2CG094100 Rh2CG430000 Rh2DG090300 Rh2DG652400 Rh5DG393800 Rh6AG269200 Rh6AG505400 Rh6BG516200 Rh6CG271500 Rh6CG522100
rosa_wichuraiana	Rw2G036210 Rw6G043990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	2 cut(s)	133, 253
AclI	AACGTT	1 cut(s)	78
AclWI	GGATC	2 cut(s)	479, 492
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	5 cut(s)	255, 442, 547, 613, 637
AgsI	TTSAA	2 cut(s)	19, 364
AjiI	CACGTC	1 cut(s)	430
AluBI	AGCT	6 cut(s)	112, 163, 232, 331, 338, 578
AluI	AGCT	6 cut(s)	112, 163, 232, 331, 338, 578
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	479, 492
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	6 cut(s)	210, 241, 502, 566, 603, 621
ApeKI	GCWGC	2 cut(s)	338, 578
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	3 cut(s)	503, 604, 622
AsuHPI	GGTGA	2 cut(s)	325, 530
BamHI	GGATCC	1 cut(s)	484
BauI	CACGAG	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	325, 565
BceAI	ACGGC	1 cut(s)	233
BciVI	GTATCC	1 cut(s)	365
BclI	TGATCA	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	365
BisI	GCNGC	2 cut(s)	339, 579
BlsI	GCNGC	2 cut(s)	340, 580
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	3 cut(s)	503, 604, 622
BmiI	GGNNCC	4 cut(s)	486, 505, 606, 624
BmrI	ACTGGG	1 cut(s)	620
BmsI	GCATC	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	620
BoxI	GACNNNNGTC	1 cut(s)	614
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
Bpu10I	CCTNAGC	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	483
BsaJI	CCNNGG	1 cut(s)	489
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	5 cut(s)	255, 442, 547, 613, 637
Bse118I	RCCGGY	1 cut(s)	568
Bse1I	ACTGG	2 cut(s)	395, 626
Bse8I	GATNNNNATC	1 cut(s)	483
BseAI	TCCGGA	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	489
BseGI	GGATG	1 cut(s)	54
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	5 cut(s)	255, 442, 547, 613, 637
BseMII	CTCAG	3 cut(s)	162, 221, 603
BseNI	ACTGG	2 cut(s)	395, 626
BseRI	GAGGAG	1 cut(s)	112
BseXI	GCAGC	2 cut(s)	325, 565
BsgI	GTGCAG	1 cut(s)	324
BshFI	GGCC	6 cut(s)	212, 243, 504, 568, 605, 623
BshVI	ATCGAT	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	11, 146, 569
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	5 cut(s)	255, 442, 547, 613, 637
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	6 cut(s)	212, 243, 504, 568, 605, 623
Bsp13I	TCCGGA	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	4 cut(s)	47, 51, 315, 484
BspACI	CCGC	2 cut(s)	133, 253
BspANI	GGCC	6 cut(s)	212, 243, 504, 568, 605, 623
BspCNI	CTCAG	3 cut(s)	163, 220, 604
BspDI	ATCGAT	1 cut(s)	50
BspEI	TCCGGA	1 cut(s)	145
BspLI	GGNNCC	4 cut(s)	486, 505, 606, 624
BspPI	GGATC	2 cut(s)	479, 492
BsrFI	RCCGGY	1 cut(s)	568
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	395, 626
BssAI	RCCGGY	1 cut(s)	568
BssECI	CCNNGG	1 cut(s)	489
BssMI	GATC	4 cut(s)	47, 51, 315, 484
BssSI	CACGAG	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	269
BstAPI	GCANNNNNTGC	2 cut(s)	261, 578
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	262, 497, 570
BstDEI	CTNAG	5 cut(s)	171, 207, 332, 437, 612
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	4 cut(s)	50, 54, 318, 487
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	4 cut(s)	47, 51, 315, 484
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 261, 344, 501, 578, 587
BstPAI	GACNNNNGTC	1 cut(s)	614
BstV1I	GCAGC	2 cut(s)	325, 565
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
Bsu15I	ATCGAT	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	6 cut(s)	212, 243, 504, 568, 605, 623
BsuTUI	ATCGAT	1 cut(s)	50
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	262, 497, 570
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	568
Cfr13I	GGNCC	3 cut(s)	503, 604, 622
ClaI	ATCGAT	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	3 cut(s)	286, 355, 376
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	5 cut(s)	171, 207, 332, 437, 612
DpnI	GATC	4 cut(s)	49, 53, 317, 486
DpnII	GATC	4 cut(s)	47, 51, 315, 484
Eco130I	CCWWGG	1 cut(s)	489
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	503, 622
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	3 cut(s)	289, 358, 379
FaiI	YATR	6 cut(s)	287, 356, 377, 473, 559, 561
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	3 cut(s)	285, 354, 375
FbaI	TGATCA	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	339, 579
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	339, 579
FspBI	CTAG	1 cut(s)	575
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	339, 579
HaeIII	GGCC	6 cut(s)	212, 243, 504, 568, 605, 623
HapII	CCGG	3 cut(s)	11, 146, 569
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	289, 358, 379
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	3 cut(s)	215, 279, 413
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	3 cut(s)	11, 146, 569
HphI	GGTGA	2 cut(s)	325, 530
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	59, 86
Hpy188III	TCNNGA	3 cut(s)	146, 466, 631
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	85, 169, 541
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	3 cut(s)	78, 429, 555
HpyCH4V	TGCA	2 cut(s)	341, 590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 261, 344, 501, 578, 587
HpyF3I	CTNAG	5 cut(s)	171, 207, 332, 437, 612
HpySE526I	ACGT	3 cut(s)	78, 429, 555
Hsp92II	CATG	3 cut(s)	289, 358, 379
HspAI	GCGC	1 cut(s)	198
Kpn2I	TCCGGA	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	568
KroNI	GCCGGC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	315
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	47, 51, 315, 484
LmnI	GCTCC	2 cut(s)	109, 296
Lsp1109I	GCAGC	2 cut(s)	325, 565
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	575
MaeII	ACGT	3 cut(s)	78, 429, 555
MaeIII	GTNAC	3 cut(s)	27, 224, 529
MalI	GATC	4 cut(s)	49, 53, 317, 486
MboI	GATC	4 cut(s)	47, 51, 315, 484
MboII	GAAGA	1 cut(s)	375
MflI	RGATCY	1 cut(s)	484
MluCI	AATT	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	145
MroNI	GCCGGC	1 cut(s)	568
MseI	TTAA	3 cut(s)	138, 180, 459
MspI	CCGG	3 cut(s)	11, 146, 569
MwoI	GCNNNNNNNGC	6 cut(s)	11, 261, 344, 501, 578, 587
NaeI	GCCGGC	1 cut(s)	570
NdeII	GATC	4 cut(s)	47, 51, 315, 484
NgoMIV	GCCGGC	1 cut(s)	568
NlaIII	CATG	3 cut(s)	289, 358, 379
NlaIV	GGNNCC	4 cut(s)	486, 505, 606, 624
NmeAIII	GCCGAG	1 cut(s)	238
PdiI	GCCGGC	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	279, 413
PkrI	GCNGC	2 cut(s)	340, 580
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PshAI	GACNNNNGTC	1 cut(s)	614
Psp1406I	AACGTT	1 cut(s)	78
PspN4I	GGNNCC	4 cut(s)	486, 505, 606, 624
PspPI	GGNCC	3 cut(s)	503, 604, 622
PsuI	RGATCY	1 cut(s)	484
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	138, 180, 459
SatI	GCNGC	2 cut(s)	339, 579
Sau3AI	GATC	4 cut(s)	47, 51, 315, 484
Sau96I	GGNCC	3 cut(s)	503, 604, 622
SchI	GAGTC	1 cut(s)	224
SfaNI	GCATC	1 cut(s)	26
Sse9I	AATT	1 cut(s)	534
SsiI	CCGC	2 cut(s)	133, 253
SspMI	CTAG	1 cut(s)	575
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	3 cut(s)	81, 432, 558
TaqI	TCGA	3 cut(s)	50, 477, 618
TasI	AATT	1 cut(s)	534
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	279, 413
Tru1I	TTAA	3 cut(s)	138, 180, 459
Tru9I	TTAA	3 cut(s)	138, 180, 459
TseI	GCWGC	2 cut(s)	338, 578
TspDTI	ATGAA	2 cut(s)	371, 417
TspGWI	ACGGA	2 cut(s)	212, 384
XagI	CCTNNNNNAGG	1 cut(s)	440
XspI	CTAG	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.