Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

15647677 .. 15649471

Gene Structure 1795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCGCCTCCGCAGAAATCGACGCTGAGATTCAACAGCAGCTTACCAATGAGGTTAAGCTCTTCAACCGTTGGAGCTTTGATGACGTTTCGGTTACGGATATTAGTCTTGTGGACTACATTGGTGTTCAGCCATCGAAGCACGCAACTTTTGTTCCCCATACTGCTGGACGATACTCTGTGAAGAGGTTCAGAAAGGCGCAGTGCCCAATTGTTGAGAGGCTCACTAACTCTCTCATGATGCACGGAAGAAACAATGGTAAGAAGTTGATGGCTGTCAGGATCGTCAAGCATGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCGATTCAAGTTATCATTGATGCCATTGTTAACAGTGGTCCACGTGAAGATGCTACCAGGATTGGATCTGCTGGTGTGGTTAGGAGGCAGGCTGTTGATATCTCTCCTCTAAGACGTGTGAACCAAGCGATCTTCTTGCTTACAACTGGTGCACGTGAAGCTGCCTTTAGAAACATCAAGACAATCGCTGAGTGCCTTGCTGATGAACTCATCAATGCTGCAAAGGGATCTTCCAACAGCTATGCCATCAAGAAGAAAGATGAGATTGAGAGAGTTGCTAAGGCCAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

207

Amino Acids

22.99

Weight (kDa)

9.69

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	47 - 207	2.2e-40	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	6, 12
AclWI	GGATC	3 cut(s)	290, 403, 565
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	2 cut(s)	374, 485
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	4 cut(s)	35, 67, 328, 338
AjiI	CACGTC	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	386
AluBI	AGCT	5 cut(s)	43, 61, 78, 491, 570
AluI	AGCT	5 cut(s)	43, 61, 78, 491, 570
Alw21I	GWGCWC	1 cut(s)	484
Alw44I	GTGCAC	1 cut(s)	480
AlwI	GGATC	3 cut(s)	290, 403, 565
AoxI	GGCC	2 cut(s)	3, 612
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	3 cut(s)	40, 491, 548
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	368
BaeGI	GKGCMC	2 cut(s)	209, 484
BbrPI	CACGTG	2 cut(s)	374, 485
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	3 cut(s)	52, 478, 535
BccI	CCATC	3 cut(s)	142, 265, 584
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BciT130I	CCWGG	1 cut(s)	388
BisI	GCNGC	4 cut(s)	6, 41, 492, 549
BlsI	GCNGC	4 cut(s)	7, 42, 493, 550
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	368
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	3 cut(s)	231, 340, 370
Bpu10I	CCTNAGC	1 cut(s)	609
BsaAI	YACGTR	2 cut(s)	374, 485
BsaJI	CCNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	297
BseMII	CTCAG	2 cut(s)	18, 510
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	426
BseSI	GKGCMC	2 cut(s)	209, 484
BseXI	GCAGC	3 cut(s)	52, 478, 535
BshFI	GGCC	2 cut(s)	5, 614
BsiHKAI	GWGCWC	1 cut(s)	484
BsnI	GGCC	2 cut(s)	5, 614
Bsp1286I	GDGCHC	2 cut(s)	209, 484
Bsp143I	GATC	4 cut(s)	282, 395, 459, 557
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	2 cut(s)	6, 12
BspANI	GGCC	2 cut(s)	5, 614
BspCNI	CTCAG	2 cut(s)	19, 511
BspHI	TCATGA	1 cut(s)	237
BspPI	GGATC	3 cut(s)	290, 403, 565
BspQI	GCTCTTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	4 cut(s)	282, 395, 459, 557
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	2 cut(s)	71, 365
Bst6I	CTCTTC	2 cut(s)	68, 179
BstBAI	YACGTR	2 cut(s)	374, 485
BstC8I	GCNNGC	3 cut(s)	144, 294, 420
BstDEI	CTNAG	4 cut(s)	27, 440, 519, 609
BstDSI	CCRYGG	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	285, 398, 462, 560
BstMBI	GATC	4 cut(s)	282, 395, 459, 557
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 139, 488
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	386
BstSLI	GKGCMC	2 cut(s)	209, 484
BstV1I	GCAGC	3 cut(s)	52, 478, 535
BstX2I	RGATCY	2 cut(s)	395, 557
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	2 cut(s)	395, 557
BsuRI	GGCC	2 cut(s)	5, 614
BtgI	CCRYGG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	446
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	2 cut(s)	209, 370
Cac8I	GCNNGC	3 cut(s)	144, 294, 420
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	368
CseI	GACGC	1 cut(s)	32
CviAII	CATG	3 cut(s)	238, 293, 298
DdeI	CTNAG	4 cut(s)	27, 440, 519, 609
DpnI	GATC	4 cut(s)	284, 397, 461, 559
DpnII	GATC	4 cut(s)	282, 395, 459, 557
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	68, 179
EarI	CTCTTC	2 cut(s)	68, 179
Eco130I	CCWWGG	1 cut(s)	297
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	368
Eco72I	CACGTG	2 cut(s)	374, 485
EcoRII	CCWGG	1 cut(s)	386
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	241, 296, 301
FaiI	YATR	5 cut(s)	162, 239, 294, 299, 573
FatI	CATG	3 cut(s)	237, 292, 297
Fnu4HI	GCNGC	4 cut(s)	6, 41, 492, 549
Fsp4HI	GCNGC	4 cut(s)	6, 41, 492, 549
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	4 cut(s)	6, 41, 492, 549
HaeIII	GGCC	2 cut(s)	5, 614
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	3 cut(s)	241, 296, 301
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	31, 334
HpaI	GTTAAC	1 cut(s)	361
Hpy166II	GTNNAC	5 cut(s)	115, 361, 371, 451, 482
Hpy188I	TCNGA	2 cut(s)	194, 322
Hpy188III	TCNNGA	4 cut(s)	238, 280, 508, 580
Hpy8I	GTNNAC	5 cut(s)	115, 361, 371, 451, 482
Hpy99I	CGWCG	1 cut(s)	26
HpyCH4III	ACNGT	2 cut(s)	71, 365
HpyCH4IV	ACGT	4 cut(s)	87, 373, 445, 484
HpyCH4V	TGCA	3 cut(s)	244, 482, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 139, 488
HpyF3I	CTNAG	4 cut(s)	27, 440, 519, 609
HpySE526I	ACGT	4 cut(s)	87, 373, 445, 484
Hsp92II	CATG	3 cut(s)	241, 296, 301
HspAI	GCGC	1 cut(s)	200
KspAI	GTTAAC	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	282, 395, 459, 557
LguI	GCTCTTC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	7 cut(s)	153, 265, 373, 387, 400, 404, 462
Lsp1109I	GCAGC	3 cut(s)	52, 478, 535
LweI	GCATC	3 cut(s)	231, 340, 370
MaeII	ACGT	4 cut(s)	87, 373, 445, 484
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	4 cut(s)	284, 397, 461, 559
MboI	GATC	4 cut(s)	282, 395, 459, 557
MboII	GAAGA	7 cut(s)	55, 196, 261, 389, 454, 552, 595
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	2 cut(s)	395, 557
MhlI	GDGCHC	2 cut(s)	209, 484
MluCI	AATT	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	53, 588
MnlI	CCTC	7 cut(s)	19, 46, 180, 213, 323, 408, 447
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	3 cut(s)	57, 360, 622
MspR9I	CCNGG	1 cut(s)	388
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	388
MwoI	GCNNNNNNNGC	3 cut(s)	11, 139, 488
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	282, 395, 459, 557
NlaIII	CATG	3 cut(s)	241, 296, 301
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PagI	TCATGA	1 cut(s)	237
PciSI	GCTCTTC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	31, 334
PkrI	GCNGC	4 cut(s)	7, 42, 493, 550
PmaCI	CACGTG	2 cut(s)	374, 485
PmlI	CACGTG	2 cut(s)	374, 485
Ppu21I	YACGTR	2 cut(s)	374, 485
Psp6I	CCWGG	1 cut(s)	386
PspCI	CACGTG	2 cut(s)	374, 485
PspGI	CCWGG	1 cut(s)	386
PspPI	GGNCC	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	395, 557
SapI	GCTCTTC	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	57, 360, 622
SatI	GCNGC	4 cut(s)	6, 41, 492, 549
Sau3AI	GATC	4 cut(s)	282, 395, 459, 557
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	2 cut(s)	209, 484
SfaNI	GCATC	3 cut(s)	231, 340, 370
SinI	GGWCC	1 cut(s)	368
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	1 cut(s)	210
SsiI	CCGC	2 cut(s)	6, 12
StyD4I	CCNGG	1 cut(s)	386
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	71, 365
TaiI	ACGT	4 cut(s)	90, 376, 448, 487
TaqI	TCGA	2 cut(s)	21, 137
TasI	AATT	1 cut(s)	210
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	31, 334
Tru1I	TTAA	3 cut(s)	57, 360, 622
Tru9I	TTAA	3 cut(s)	57, 360, 622
TscAI	CASTG	2 cut(s)	209, 370
TseI	GCWGC	3 cut(s)	40, 491, 548
TspDTI	ATGAA	1 cut(s)	549
TspGWI	ACGGA	2 cut(s)	113, 261
TspRI	CASTG	2 cut(s)	209, 370
VneI	GTGCAC	1 cut(s)	480
VpaK11BI	GGWCC	1 cut(s)	368
XceI	RCATGY	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.