Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

18804282 .. 18809770

Gene Structure 5489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAAGGAGACATGCGAAGAGTAGAAGAACGAGATTTGGCTTCCACAATCCTATGGTTTTTGGCGTCACCGTGGAAGAAGGTGTTTATAGGTTTTTGGGACTCCGCAGTCTCATTAAGTCGAGTCCCCGTTATTTCCAAACACGGGATAGTGTACTCGGTCAAACGATTCGGGAAAGCCCAATGCGAGACTTACAAACTCGCTAATGATGCACGGGAGAAACAACGGGAAGAAACGATGGCTGTCGGGATTATTAGGCACGCAATGGAGATTACCAATTTGCTAACCGATTTGAACCCCATCCATGTTATTGTCGACGCTGATGTCAATAGTGCTTCACGTGAAGACAGAGACGTCGCAGCACGTATTGGCTTTGCTGGTGCATACTCCAACGTTCGGGATATTCGCCACAAGGTCGCCGCCCATGTGCGTAACGGGCCGTGCGTGGCGAAGAAGGCAGTCCGAATTGTGGGTTCGTTTTCTTGGAGCTTGGAATCGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

167

Amino Acids

18.76

Weight (kDa)

9.39

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	107, 323, 353
AatII	GACGTC	1 cut(s)	357
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	105, 420
AclI	AACGTT	1 cut(s)	393
AcvI	CACGTG	1 cut(s)	341
AcyI	GRCGYC	2 cut(s)	65, 354
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	144, 396, 469
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
Alw26I	GTCTC	4 cut(s)	3, 115, 182, 345
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	60
BbrPI	CACGTG	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	2 cut(s)	232, 308
BceAI	ACGGC	1 cut(s)	424
BcoDI	GTCTC	4 cut(s)	3, 115, 182, 345
BisI	GCNGC	2 cut(s)	360, 420
BlsI	GCNGC	2 cut(s)	361, 421
BmgT120I	GGNCC	1 cut(s)	437
BmsI	GCATC	1 cut(s)	199
BpiI	GAAGAC	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	497
BsaAI	YACGTR	2 cut(s)	341, 365
BsaHI	GRCGYC	2 cut(s)	65, 354
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 396, 469
Bse3DI	GCAATG	1 cut(s)	270
BseCI	ATCGAT	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	3 cut(s)	144, 396, 469
BseMI	GCAATG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	371
BshFI	GGCC	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	497
BslFI	GGGAC	2 cut(s)	110, 113
BslI	CCNNNNNNNGG	3 cut(s)	144, 396, 469
BsmAI	GTCTC	4 cut(s)	3, 115, 182, 345
BsmBI	CGTCTC	1 cut(s)	345
BsmFI	GGGAC	2 cut(s)	110, 113
BsnI	GGCC	1 cut(s)	439
BspACI	CCGC	2 cut(s)	105, 420
BspANI	GGCC	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	71
BssNI	GRCGYC	2 cut(s)	65, 354
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	13
BstACI	GRCGYC	2 cut(s)	65, 354
BstBAI	YACGTR	2 cut(s)	341, 365
BstC8I	GCNNGC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	300
BstMAI	GTCTC	4 cut(s)	3, 115, 182, 345
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 436, 455
BstNSI	RCATGY	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	371
BstV2I	GAAGAC	1 cut(s)	351
Bsu15I	ATCGAT	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	439
BsuTUI	ATCGAT	1 cut(s)	497
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	300
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	497
CseI	GACGC	2 cut(s)	54, 326
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	3 cut(s)	13, 305, 425
CviJI	RGCY	6 cut(s)	41, 179, 242, 372, 439, 489
CviKI_1	RGCY	6 cut(s)	41, 179, 242, 372, 439, 489
CviQI	GTAC	1 cut(s)	154
DrdI	GACNNNNNNGTC	3 cut(s)	107, 323, 353
DseDI	GACNNNNNNGTC	3 cut(s)	107, 323, 353
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
Eco72I	CACGTG	1 cut(s)	341
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	3 cut(s)	16, 308, 428
FaiI	YATR	6 cut(s)	14, 55, 89, 306, 385, 426
FaqI	GGGAC	2 cut(s)	110, 113
FatI	CATG	3 cut(s)	12, 304, 424
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	360, 420
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	360, 420
GluI	GCNGC	2 cut(s)	360, 420
HaeIII	GGCC	1 cut(s)	439
HgaI	GACGC	2 cut(s)	54, 326
Hin1I	GRCGYC	2 cut(s)	65, 354
Hin1II	CATG	3 cut(s)	16, 308, 428
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	4 cut(s)	101, 123, 168, 494
HphI	GGTGA	1 cut(s)	60
Hpy166II	GTNNAC	2 cut(s)	154, 316
Hpy188I	TCNGA	1 cut(s)	464
Hpy188III	TCNNGA	3 cut(s)	172, 247, 398
Hpy8I	GTNNAC	2 cut(s)	154, 316
Hpy99I	CGWCG	2 cut(s)	320, 359
HpyAV	CCTTC	2 cut(s)	73, 448
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	4 cut(s)	340, 354, 364, 393
HpyCH4V	TGCA	2 cut(s)	212, 383
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 436, 455
HpySE526I	ACGT	4 cut(s)	340, 354, 364, 393
Hsp92I	GRCGYC	2 cut(s)	65, 354
Hsp92II	CATG	3 cut(s)	16, 308, 428
LmnI	GCTCC	1 cut(s)	486
LpnPI	CCDG	1 cut(s)	363
Lsp1109I	GCAGC	1 cut(s)	371
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	4 cut(s)	340, 354, 364, 393
MaeIII	GTNAC	2 cut(s)	66, 431
MboII	GAAGA	6 cut(s)	30, 38, 88, 242, 356, 463
MluCI	AATT	2 cut(s)	277, 465
MlyI	GAGTC	2 cut(s)	95, 132
MmeI	TCCRAC	1 cut(s)	414
MseI	TTAA	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	209, 436, 455
NlaIII	CATG	3 cut(s)	16, 308, 428
NmuCI	GTSAC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	168, 494
PkrI	GCNGC	2 cut(s)	361, 421
PleI	GAGTC	2 cut(s)	95, 131
PmaCI	CACGTG	1 cut(s)	341
PmlI	CACGTG	1 cut(s)	341
PpsI	GAGTC	2 cut(s)	95, 131
Ppu21I	YACGTR	2 cut(s)	341, 365
Psp1406I	AACGTT	1 cut(s)	393
PspCI	CACGTG	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	437
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	2 cut(s)	360, 420
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	2 cut(s)	95, 132
SetI	ASST	8 cut(s)	84, 94, 343, 357, 367, 396, 417, 491
SfaNI	GCATC	1 cut(s)	199
Sse9I	AATT	2 cut(s)	277, 465
SsiI	CCGC	2 cut(s)	105, 420
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	4 cut(s)	343, 357, 367, 396
TaqI	TCGA	3 cut(s)	121, 315, 497
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	277, 465
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	422
TfiI	GAWTC	2 cut(s)	168, 494
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	66
XceI	RCATGY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.