Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

3098535 .. 3100453

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g03700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAATGGACACTTGTGTATTCACTTAAACCCTAGTACATTAAACACTTGTACCCTGCGCCGTTTTATTGTCTTCTCCAAGCTCTCTCACCCTCGTCTGAAACTCCAGCCTCCAGAAACCATGGCCGCTGCGGATGTTGCTGCTCCTGTATTGGAACCAACGCTGGCGCACTATGACGTGAAGCTCTTCAATCGCTGGAGCTTCGATGATGTCCAGGTCAGTGACATTTCACTGGCGGATTATGTTGGAGTTGCACCTTCCAAGCATGCAACTTATGTACCTCACACTGCTGGGAGATACTCGGTCAAGCGATTCAGGAAAGCTCAGTGCCCTATTGTGGAGAGGCTTACTAACTCACTCATGATGCACGGCAGAAACAATGGAAAGAAACTCATGGCTGTCAGGATTGTTAGGCACGCGATGGAAATTATTCATTTGCTAACTGATCTGAACCCAATCCAAGTTATTGTTGATGCTGTTGTTAACAGTGGTCCACGTGAAGATGCAACTCGTATTGGATCTGCTGGAGTTGTTAGGCGTCAGGCTGTGGATATCTCGCCTTTGAGGCGTGTGAATCAGGCTATCTATCTCCTCACAACCGGGGCTCGTGAATCTGCTTTCAGGAACGTCAAAACTATTGCCGAGTGTTTGGCTGATGAGCTTATTAATGCTGCCAAAGGTTCCTCGAACAGTTATGCAATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

249

Amino Acids

27.56

Weight (kDa)

9.85

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	419
AciI	CCGC	3 cut(s)	126, 131, 236
AclWI	GGATC	1 cut(s)	526
AcoI	YGGCCR	1 cut(s)	123
AcvI	CACGTG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	538
AfaI	GTAC	3 cut(s)	37, 52, 279
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	190, 722
AjiI	CACGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	5 cut(s)	82, 184, 201, 323, 661
AluI	AGCT	5 cut(s)	82, 184, 201, 323, 661
AlwI	GGATC	1 cut(s)	526
AoxI	GGCC	2 cut(s)	123, 735
ApeKI	GCWGC	3 cut(s)	128, 140, 671
AseI	ATTAAT	1 cut(s)	666
Asp700I	GAANNNNTTC	2 cut(s)	185, 429
AspLEI	GCGC	2 cut(s)	60, 169
AspS9I	GGNCC	1 cut(s)	491
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	332
BaeI	ACNNNNGTAYC	4 cut(s)	34, 67, 261, 294
BanII	GRGCYC	1 cut(s)	607
BauI	CACGAG	1 cut(s)	606
BbrPI	CACGTG	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	3 cut(s)	115, 127, 658
BccI	CCATC	1 cut(s)	415
BceAI	ACGGC	2 cut(s)	45, 385
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	601
BfaI	CTAG	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	565
BisI	GCNGC	4 cut(s)	126, 129, 141, 672
BlsI	GCNGC	4 cut(s)	127, 130, 142, 673
Bme1390I	CCNGG	2 cut(s)	215, 601
Bme18I	GGWCC	1 cut(s)	491
BmgBI	CACGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	491
BmiI	GGNNCC	2 cut(s)	156, 682
BmrFI	CCNGG	2 cut(s)	215, 601
BmsI	GCATC	3 cut(s)	354, 463, 493
BpiI	GAAGAC	1 cut(s)	64
BpmI	CTGGAG	4 cut(s)	89, 96, 217, 546
BpuMI	CCSGG	1 cut(s)	601
BsaAI	YACGTR	1 cut(s)	497
BsaHI	GRCGYC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	120, 600, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	3 cut(s)	120, 600, 732
BseGI	GGATG	2 cut(s)	139, 718
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	3 cut(s)	115, 127, 658
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	125, 737
BsiSI	CCGG	1 cut(s)	600
BslI	CCNNNNNNNGG	1 cut(s)	337
BsnI	GGCC	2 cut(s)	125, 737
Bsp1286I	GDGCHC	2 cut(s)	332, 607
Bsp143I	GATC	2 cut(s)	445, 518
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	3 cut(s)	126, 131, 236
BspANI	GGCC	2 cut(s)	125, 737
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	419
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	156, 682
BspPI	GGATC	1 cut(s)	526
BspQI	GCTCTTC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	3 cut(s)	120, 600, 732
BssMI	GATC	2 cut(s)	445, 518
BssNI	GRCGYC	1 cut(s)	538
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	120, 732
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	488, 692, 743
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	538
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	3 cut(s)	165, 267, 417
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	139, 718
BstFNI	CGCG	1 cut(s)	419
BstHHI	GCGC	2 cut(s)	60, 169
BstKTI	GATC	2 cut(s)	448, 521
BstMBI	GATC	2 cut(s)	445, 518
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 565
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	213, 599
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	115, 127, 658
BstV2I	GAAGAC	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	125, 737
BtgI	CCRYGG	1 cut(s)	120
BtgZI	GCGATG	1 cut(s)	434
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	139, 718
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	5 cut(s)	226, 230, 285, 332, 493
Cac8I	GCNNGC	3 cut(s)	165, 267, 417
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	2 cut(s)	60, 169
Cfr13I	GGNCC	1 cut(s)	491
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	3 cut(s)	36, 51, 278
CviAII	CATG	4 cut(s)	121, 266, 361, 394
CviQI	GTAC	3 cut(s)	36, 51, 278
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	2 cut(s)	447, 520
DpnII	GATC	2 cut(s)	445, 518
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	120, 732
Eco24I	GRGCYC	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	491
Eco72I	CACGTG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	120, 732
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	2 cut(s)	120, 732
FaeI	CATG	4 cut(s)	124, 269, 364, 397
FaiI	YATR	8 cut(s)	122, 174, 243, 267, 276, 362, 395, 696
FatI	CATG	4 cut(s)	120, 265, 360, 393
Fnu4HI	GCNGC	4 cut(s)	126, 129, 141, 672
FokI	GGATG	2 cut(s)	146, 725
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	4 cut(s)	126, 129, 141, 672
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	59, 168
GluI	GCNGC	4 cut(s)	126, 129, 141, 672
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	4 cut(s)	89, 96, 217, 546
HaeIII	GGCC	2 cut(s)	125, 737
HapII	CCGG	1 cut(s)	600
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	2 cut(s)	60, 169
Hin1I	GRCGYC	1 cut(s)	538
Hin1II	CATG	4 cut(s)	124, 269, 364, 397
Hin6I	GCGC	2 cut(s)	58, 167
HinP1I	GCGC	2 cut(s)	58, 167
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	3 cut(s)	312, 574, 611
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	484, 494
Hpy188I	TCNGA	2 cut(s)	99, 450
Hpy188III	TCNNGA	7 cut(s)	113, 316, 361, 403, 608, 622, 703
Hpy8I	GTNNAC	2 cut(s)	484, 494
HpyAV	CCTTC	2 cut(s)	267, 703
HpyCH4III	ACNGT	3 cut(s)	488, 692, 743
HpyCH4IV	ACGT	3 cut(s)	177, 496, 627
HpyCH4V	TGCA	5 cut(s)	254, 269, 367, 506, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 565
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	3 cut(s)	177, 496, 627
Hsp92I	GRCGYC	1 cut(s)	538
Hsp92II	CATG	4 cut(s)	124, 269, 364, 397
HspAI	GCGC	2 cut(s)	58, 167
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	445, 518
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	2 cut(s)	148, 198
Lsp1109I	GCAGC	3 cut(s)	115, 127, 658
LweI	GCATC	3 cut(s)	354, 463, 493
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	3 cut(s)	177, 496, 627
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	447, 520
MboI	GATC	2 cut(s)	445, 518
MboII	GAAGA	4 cut(s)	64, 178, 512, 718
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	332, 607
MluCI	AATT	1 cut(s)	426
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	7 cut(s)	102, 120, 291, 336, 558, 602, 694
MroXI	GAANNNNTTC	2 cut(s)	185, 429
MseI	TTAA	5 cut(s)	26, 41, 483, 666, 745
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	2 cut(s)	215, 601
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	419
MwoI	GCNNNNNNNGC	2 cut(s)	137, 565
NciI	CCSGG	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	2 cut(s)	445, 518
NlaIII	CATG	4 cut(s)	124, 269, 364, 397
NlaIV	GGNNCC	2 cut(s)	156, 682
NmeAIII	GCCGAG	1 cut(s)	667
NmuCI	GTSAC	1 cut(s)	221
NspI	RCATGY	1 cut(s)	269
PaeI	GCATGC	1 cut(s)	269
PagI	TCATGA	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	191
PdmI	GAANNNNTTC	2 cut(s)	185, 429
PfeI	GAWTC	3 cut(s)	312, 574, 611
PkrI	GCNGC	4 cut(s)	127, 130, 142, 673
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
Ppu21I	YACGTR	1 cut(s)	497
PshBI	ATTAAT	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	213
PspCI	CACGTG	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	156, 682
PspPI	GGNCC	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	3 cut(s)	37, 52, 279
RsaNI	GTAC	3 cut(s)	36, 51, 278
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	5 cut(s)	26, 41, 483, 666, 745
SatI	GCNGC	4 cut(s)	126, 129, 141, 672
Sau3AI	GATC	2 cut(s)	445, 518
Sau96I	GGNCC	1 cut(s)	491
ScrFI	CCNGG	2 cut(s)	215, 601
SduI	GDGCHC	2 cut(s)	332, 607
SfaNI	GCATC	3 cut(s)	354, 463, 493
SinI	GGWCC	1 cut(s)	491
SphI	GCATGC	1 cut(s)	269
Sse9I	AATT	1 cut(s)	426
SsiI	CCGC	3 cut(s)	126, 131, 236
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	213, 599
StyI	CCWWGG	2 cut(s)	120, 732
TaaI	ACNGT	3 cut(s)	488, 692, 743
TaiI	ACGT	3 cut(s)	180, 499, 630
TaqI	TCGA	2 cut(s)	204, 686
TaqII	GACCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	426
TatI	WGTACW	1 cut(s)	35
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	312, 574, 611
Tru1I	TTAA	5 cut(s)	26, 41, 483, 666, 745
Tru9I	TTAA	5 cut(s)	26, 41, 483, 666, 745
TscAI	CASTG	5 cut(s)	226, 237, 292, 332, 493
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	128, 140, 671
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	17, 422
TspRI	CASTG	5 cut(s)	226, 237, 292, 332, 493
VpaK11BI	GGWCC	1 cut(s)	491
VspI	ATTAAT	1 cut(s)	666
XceI	RCATGY	1 cut(s)	269
XmnI	GAANNNNTTC	2 cut(s)	185, 429
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.