Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Forward (+)

29003788 .. 29005540

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g33535.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCATGCTGCTTTGCCAGATCTCGACAATTCAACATCTTTCTTTGGTGTCTACGATGGTCATGGAGGTAAAGCGGTGGCAAACTTCTGCGCCAAGTATCTCCACTTACAAGTGCTCAACCAGGAAACATCTTGTTTGTTGAATAAATCGAAGTCTATCATTCAAGTTATTGTTGATGCTGTTGTTAACAGTGGTCCACGTGAAGATGCCACTCGTATTGGATCCACTGGAGTTGTTAGGCGTCAGGCTGTGGATATCTCACCTCTAAGACGTGTGAATCAGGCTATCTATCTCCTGACAACTGGTGCTCGTGAGTCTGCTTTCAGGAACATCAAAACTATTGTTGAATGCTTGGCTGATGAGCTTATCAATGCTGCCAAAGGTTCCTCCAACAGTTATGCTATCAAGAAGAAGGATGCGATTGAAAGGGTTGCCAAGGCCAATCGTGAAGGTGCTTCTGGTACTGAGGACTACAATTTCAAATCAAAGTGGATGTTATGTATCAAAGAAGAACAAACTGGGTTTTATTTATCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

180

Amino Acids

19.65

Weight (kDa)

8.87

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	49 - 149	3.1e-25	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	2 cut(s)	216, 229
AcvI	CACGTG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	241
AfaI	GTAC	1 cut(s)	463
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	6 cut(s)	33, 142, 164, 347, 425, 481
AjiI	CACGTC	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	364
AluI	AGCT	1 cut(s)	364
Alw21I	GWGCWC	2 cut(s)	117, 310
AlwI	GGATC	2 cut(s)	216, 229
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	8, 374
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	309
BbrPI	CACGTG	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	117, 310
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	2 cut(s)	9, 375
BlsI	GCNGC	2 cut(s)	10, 376
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	223, 385
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	3 cut(s)	166, 196, 406
BmuI	ACTGGG	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	435
Bse1I	ACTGG	3 cut(s)	232, 307, 523
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	421, 498
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	3 cut(s)	232, 307, 523
BseXI	GCAGC	1 cut(s)	361
BshFI	GGCC	1 cut(s)	440
BsiHKAI	GWGCWC	2 cut(s)	117, 310
BsmI	GAATGC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	117, 310
Bsp143I	GATC	2 cut(s)	19, 221
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	2 cut(s)	223, 385
BspPI	GGATC	2 cut(s)	216, 229
BsrI	ACTGG	3 cut(s)	232, 307, 523
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	2 cut(s)	19, 221
BssNI	GRCGYC	1 cut(s)	241
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	191, 395
BstACI	GRCGYC	1 cut(s)	241
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	266, 465
BstF5I	GGATG	2 cut(s)	421, 498
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	2 cut(s)	22, 224
BstMBI	GATC	2 cut(s)	19, 221
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	19, 221
BstYI	RGATCY	2 cut(s)	19, 221
BsuRI	GGCC	1 cut(s)	440
BtrI	CACGTC	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	421, 498
BtsIMutI	CAGTG	2 cut(s)	196, 225
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	462
CspCI	CAANNNNNGTGG	4 cut(s)	199, 214, 234, 249
CviAII	CATG	2 cut(s)	5, 62
CviJI	RGCY	5 cut(s)	248, 284, 356, 364, 440
CviKI_1	RGCY	5 cut(s)	248, 284, 356, 364, 440
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	266, 465
DpnI	GATC	2 cut(s)	21, 223
DpnII	GATC	2 cut(s)	19, 221
Eco130I	CCWWGG	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	194
Eco72I	CACGTG	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	435
FaeI	CATG	2 cut(s)	8, 65
FaiI	YATR	4 cut(s)	6, 63, 399, 499
FatI	CATG	2 cut(s)	4, 61
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	9, 375
FokI	GGATG	2 cut(s)	428, 505
Fsp4HI	GCNGC	2 cut(s)	9, 375
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	2 cut(s)	9, 375
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	440
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	8, 65
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	277, 314
HpaI	GTTAAC	1 cut(s)	187
HphI	GGTGA	1 cut(s)	252
Hpy166II	GTNNAC	3 cut(s)	52, 187, 197
Hpy188III	TCNNGA	6 cut(s)	23, 295, 311, 325, 406, 446
Hpy8I	GTNNAC	3 cut(s)	52, 187, 197
HpyAV	CCTTC	2 cut(s)	406, 443
HpyCH4III	ACNGT	2 cut(s)	191, 395
HpyCH4IV	ACGT	2 cut(s)	199, 271
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	266, 465
HpySE526I	ACGT	2 cut(s)	199, 271
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	2 cut(s)	8, 65
HspAI	GCGC	1 cut(s)	90
KspAI	GTTAAC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	19, 221
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	3 cut(s)	166, 196, 406
MaeII	ACGT	2 cut(s)	199, 271
MalI	GATC	2 cut(s)	21, 223
MboI	GATC	2 cut(s)	19, 221
MboII	GAAGA	3 cut(s)	215, 421, 521
MflI	RGATCY	2 cut(s)	19, 221
MhlI	GDGCHC	2 cut(s)	117, 310
MluCI	AATT	2 cut(s)	28, 475
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	4 cut(s)	59, 273, 397, 460
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	186
MspR9I	CCNGG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	353
MvaI	CCWGG	1 cut(s)	122
NdeII	GATC	2 cut(s)	19, 221
NlaIII	CATG	2 cut(s)	8, 65
NlaIV	GGNNCC	2 cut(s)	223, 385
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	10, 376
PleI	GAGTC	1 cut(s)	322
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	322
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	120
PspCI	CACGTG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	223, 385
PspPI	GGNCC	1 cut(s)	194
PsuI	RGATCY	2 cut(s)	19, 221
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	9, 375
Sau3AI	GATC	2 cut(s)	19, 221
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	117, 310
SetI	ASST	7 cut(s)	70, 202, 265, 274, 366, 385, 454
SfaNI	GCATC	3 cut(s)	166, 196, 406
SinI	GGWCC	1 cut(s)	194
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	28, 475
SsiI	CCGC	1 cut(s)	74
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	2 cut(s)	191, 395
TaiI	ACGT	2 cut(s)	202, 274
TaqI	TCGA	2 cut(s)	24, 149
TasI	AATT	2 cut(s)	28, 475
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	2 cut(s)	196, 232
TseI	GCWGC	2 cut(s)	8, 374
TspRI	CASTG	2 cut(s)	196, 232
VpaK11BI	GGWCC	1 cut(s)	194
XceI	RCATGY	1 cut(s)	8
XmiI	GTMKAC	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.