Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Forward (+)

25309694 .. 25311644

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g28970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTACATCACGCGTAGCGCGCGTGCTATAAAAAAGGACTTTTGTACTCGCAAGCTGATTAAAGAAGCTCTTCCTCTACTAGACCATTTTCCCTGTCTGCCGTTCCCTCGTGTTCAGCTCAAGCTCTCCCGTTCTCGTCTGAAACTCCATCCTCCGGCTTCGGATCAGTGTTCACCTCTCTCACTTCTCTGCCACTTCCCGCAGTCAACCATGGCAGCCGCCGCTATAGCTGTTCCTTCTGCGGTCGAACCAACGGAACCTCACTATGACGTGAAGCTGTTCAACCGCTGGAGCTTCGACGATGTCCAGGTCAGTGACATTTCACTGGCGGACTGTTGGAGTGGTGCCTGCCAGGCATGCAACTTACGTACCTCACACTGCTGGGAGATACTCAGTGAAGCGATTCAGGAAAGCTCAGTGCCCAATTGTGGAGAGGCTTACAAACTCACTCATGATGCATGGAAGAAACAACTGAAAGAAATTGATGGCTGTCAGGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

168

Amino Acids

18.85

Weight (kDa)

6.97

Isoelectric Point (pI)

63.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccII	CGCG	3 cut(s)	13, 20, 22
AciI	CCGC	6 cut(s)	200, 219, 222, 242, 286, 329
AclWI	GGATC	1 cut(s)	171
AfaI	GTAC	3 cut(s)	5, 46, 370
AfiI	CCNNNNNNNGG	2 cut(s)	154, 428
AflIII	ACRYGT	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	2 cut(s)	306, 351
AluBI	AGCT	8 cut(s)	55, 68, 118, 124, 230, 277, 294, 414
AluI	AGCT	8 cut(s)	55, 68, 118, 124, 230, 277, 294, 414
AlwI	GGATC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	215
Asp700I	GAANNNNTTC	3 cut(s)	69, 278, 402
AspLEI	GCGC	2 cut(s)	20, 22
AsuHPI	GGTGA	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	423
BaeI	ACNNNNGTAYC	2 cut(s)	352, 385
BanI	GGYRCC	1 cut(s)	344
BauI	CACGAG	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	156, 479
BceAI	ACGGC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	308, 353
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	3 cut(s)	216, 219, 222
BlsI	GCNGC	3 cut(s)	217, 220, 223
Bme1390I	CCNGG	2 cut(s)	308, 353
BmgBI	CACGTC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	258, 346
BmrFI	CCNGG	2 cut(s)	308, 353
BmsI	GCATC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 428
Bse1I	ACTGG	1 cut(s)	330
BseBI	CCWGG	2 cut(s)	308, 353
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	154, 428
BseMII	CTCAG	2 cut(s)	406, 429
BseNI	ACTGG	1 cut(s)	330
BsePI	GCGCGC	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	381
Bsh1236I	CGCG	3 cut(s)	13, 20, 22
Bsh1285I	CGRYCG	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	154, 428
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	163
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	6 cut(s)	200, 219, 222, 242, 286, 329
BspCNI	CTCAG	2 cut(s)	405, 428
BspFNI	CGCG	3 cut(s)	13, 20, 22
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	258, 346
BspPI	GGATC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	75
BspT107I	GGYRCC	1 cut(s)	344
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	210
BssHII	GCGCGC	1 cut(s)	18
BssMI	GATC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	308, 353
Bst4CI	ACNGT	1 cut(s)	335
Bst6I	CTCTTC	1 cut(s)	75
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	368
BstC8I	GCNNGC	5 cut(s)	20, 24, 53, 349, 358
BstDEI	CTNAG	2 cut(s)	392, 415
BstDSI	CCRYGG	1 cut(s)	210
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	3 cut(s)	13, 20, 22
BstHHI	GCGC	2 cut(s)	20, 22
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	246
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 221, 227, 353, 357
BstNI	CCWGG	2 cut(s)	308, 353
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	2 cut(s)	306, 351
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	423
BstSNI	TACGTA	1 cut(s)	368
BstUI	CGCG	3 cut(s)	13, 20, 22
BstV1I	GCAGC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	6 cut(s)	173, 319, 323, 376, 400, 423
Cac8I	GCNNGC	5 cut(s)	20, 24, 53, 349, 358
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	2 cut(s)	20, 22
Csp6I	GTAC	3 cut(s)	4, 45, 369
CviAII	CATG	4 cut(s)	211, 357, 452, 459
CviQI	GTAC	3 cut(s)	4, 45, 369
DdeI	CTNAG	2 cut(s)	392, 415
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
EciI	GGCGGA	1 cut(s)	344
Eco105I	TACGTA	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	210
EcoRII	CCWGG	2 cut(s)	306, 351
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	214, 360, 455, 462
FaiI	YATR	7 cut(s)	29, 212, 227, 267, 358, 453, 460
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	4 cut(s)	210, 356, 451, 458
FauI	CCCGC	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	216, 219, 222
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	216, 219, 222
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	2 cut(s)	19, 21
GluI	GCNGC	3 cut(s)	216, 219, 222
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	1 cut(s)	310
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	2 cut(s)	20, 22
Hin1II	CATG	4 cut(s)	214, 360, 455, 462
Hin6I	GCGC	2 cut(s)	18, 20
HinP1I	GCGC	2 cut(s)	18, 20
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	173, 207
Hpy188I	TCNGA	2 cut(s)	141, 163
Hpy188III	TCNNGA	3 cut(s)	407, 452, 494
Hpy8I	GTNNAC	2 cut(s)	173, 207
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	2 cut(s)	270, 367
HpyCH4V	TGCA	2 cut(s)	360, 458
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 221, 227, 353, 357
HpyF3I	CTNAG	2 cut(s)	392, 415
HpySE526I	ACGT	2 cut(s)	270, 367
Hsp92II	CATG	4 cut(s)	214, 360, 455, 462
HspAI	GCGC	2 cut(s)	18, 20
Kzo9I	GATC	1 cut(s)	163
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	291
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	270, 367
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	2 cut(s)	62, 475
MfeI	CAATTG	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	2 cut(s)	424, 480
MluI	ACGCGT	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	7 cut(s)	84, 117, 162, 186, 270, 382, 427
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	3 cut(s)	69, 278, 402
MseI	TTAA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	2 cut(s)	308, 353
MunI	CAATTG	1 cut(s)	424
MvaI	CCWGG	2 cut(s)	308, 353
MvnI	CGCG	3 cut(s)	13, 20, 22
MwoI	GCNNNNNNNGC	5 cut(s)	19, 221, 227, 353, 357
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	4 cut(s)	214, 360, 455, 462
NlaIV	GGNNCC	2 cut(s)	258, 346
NmuCI	GTSAC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	360
PaeI	GCATGC	1 cut(s)	360
PagI	TCATGA	1 cut(s)	451
PauI	GCGCGC	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	75
PdmI	GAANNNNTTC	3 cut(s)	69, 278, 402
PfeI	GAWTC	1 cut(s)	403
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	217, 220, 223
Ppu21I	YACGTR	1 cut(s)	368
Psp6I	CCWGG	2 cut(s)	306, 351
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	2 cut(s)	306, 351
PspN4I	GGNNCC	2 cut(s)	258, 346
PsyI	GACNNNGTC	1 cut(s)	302
PteI	GCGCGC	1 cut(s)	18
RsaI	GTAC	3 cut(s)	5, 46, 370
RsaNI	GTAC	3 cut(s)	4, 45, 369
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	3 cut(s)	216, 219, 222
Sau3AI	GATC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	308, 353
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SnaBI	TACGTA	1 cut(s)	368
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	2 cut(s)	424, 480
SsiI	CCGC	6 cut(s)	200, 219, 222, 242, 286, 329
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	306, 351
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	2 cut(s)	273, 370
TaqI	TCGA	2 cut(s)	246, 297
TasI	AATT	2 cut(s)	424, 480
TatI	WGTACW	2 cut(s)	3, 44
TauI	GCSGC	2 cut(s)	221, 224
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	6 cut(s)	173, 319, 330, 383, 400, 423
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	6 cut(s)	173, 319, 330, 383, 400, 423
Tth111I	GACNNNGTC	1 cut(s)	302
XceI	RCATGY	1 cut(s)	360
XmnI	GAANNNNTTC	3 cut(s)	69, 278, 402
XspI	CTAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.