Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

42488226 .. 42489796

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G027230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAACACTCTCCTCCTTCTTCAATTAATTATCTGCTGGGAGGTACTCAGTCAAACGATTCAGGAAAGCCCAATACTGAGACTTACAAACTCTCTAATGATGCACGGGAGAAACAACAGGAAGAAACTGATGGCTGTCAGGATTATTAGGCACGCATTGGAGATTACCAATTTGCTAACTGATTTGAACCCCATCCATGTTATTGTCGACACTGATGTCAATAGTTGTTGTTATCAGGCTGTGGATATCACACGATTTAGACGTGTGAATCAAGCTAGCTACCTATCTTCTTACAACTGGACATCAAAACTATTGCCGAATCATTTAAAAGATCAGATAAGCCTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

116

Amino Acids

13.46

Weight (kDa)

9.25

Isoelectric Point (pI)

35.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	45
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	23, 187
AjiI	CACGTC	1 cut(s)	263
AluBI	AGCT	2 cut(s)	275, 279
AluI	AGCT	2 cut(s)	275, 279
Alw26I	GTCTC	1 cut(s)	73
AseI	ATTAAT	1 cut(s)	26
AsuNHI	GCTAGC	1 cut(s)	275
BccI	CCATC	2 cut(s)	124, 200
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	276, 344
BmgBI	CACGTC	1 cut(s)	263
BmsI	GCATC	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	61, 68
BseNI	ACTGG	1 cut(s)	302
BseYI	CCCAGC	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	331
BspCNI	CTCAG	2 cut(s)	60, 69
BspOI	GCTAGC	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	153, 277
BstDEI	CTNAG	2 cut(s)	47, 77
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	331
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	2 cut(s)	153, 277
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	6 cut(s)	69, 134, 239, 275, 279, 342
CviKI_1	RGCY	6 cut(s)	69, 134, 239, 275, 279, 342
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	2 cut(s)	47, 77
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraI	TTTAAA	1 cut(s)	327
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	247
FaeI	CATG	1 cut(s)	200
FaiI	YATR	1 cut(s)	198
FatI	CATG	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	207
FokI	GGATG	1 cut(s)	179
FspBI	CTAG	2 cut(s)	276, 344
GsaI	CCCAGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	58, 268, 319
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	2 cut(s)	62, 139
Hpy8I	GTNNAC	1 cut(s)	208
HpyAV	CCTTC	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	103
HpyF3I	CTNAG	2 cut(s)	47, 77
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	6 cut(s)	22, 47, 103, 124, 221, 283
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	276, 344
MaeII	ACGT	1 cut(s)	262
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	11, 133, 279
MluCI	AATT	3 cut(s)	23, 27, 169
MnlI	CCTC	2 cut(s)	23, 34
MseI	TTAA	2 cut(s)	26, 326
NdeII	GATC	1 cut(s)	331
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PfeI	GAWTC	3 cut(s)	58, 268, 319
PshBI	ATTAAT	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	26, 326
Sau3AI	GATC	1 cut(s)	331
SetI	ASST	5 cut(s)	45, 265, 277, 281, 285
SfaNI	GCATC	1 cut(s)	90
Sse9I	AATT	3 cut(s)	23, 27, 169
SspMI	CTAG	2 cut(s)	276, 344
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	23, 27, 169
TfiI	GAWTC	3 cut(s)	58, 268, 319
Tru1I	TTAA	2 cut(s)	26, 326
Tru9I	TTAA	2 cut(s)	26, 326
TscAI	CASTG	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	217
VspI	ATTAAT	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	2 cut(s)	276, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.