Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Forward (+)

41530767 .. 41532079

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G502000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTGCTGTTGAACCTCCTGCTCCGGCTCCAGTTCCGGCTCCTGCTGCAGTAGAACCCACTTTGCCTCACCACGACGTCAAGCTCTTCAACCGCTGGAGCTTCGACGACGTCCAGGTGAGTGACATCTCCCTGGCCGATTACGTTGGAGTGGTGCCAGCGAAACACGCCACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTGAAGCGATTCAGGAAGGCCCAGTGCCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGAAGAAACAACGGGAAGAAGCTCATGGCTGTCAGGATTATTAGGCATGCCATGGAAATCATCCATTTGCTCACTGACCTCAACCCAATCCAAGTCATTGTTGATGCTGTTGTTAATAGTGGTCCTCGTGAAGATGCCACTCGTATTGGGTCTGCTGGAGTTGTTAGGCGTCAGGCTGTGGATATCTCACCTTTGAGACGTGTTAACCAGGCAATCTATTTGCTTACAACCGGTGCTCGTGAGTCAGCTTTCAGGAACATCAAAACCATTGCTGAATGCTTGGCTGATGAACTGATTAATGCTGCAAAGGGTTCCTCTAACAGTTATGCTATCAAGAAGAAGGACGAGATTGAAAGAGTTGCTAAGGCTAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

216

Amino Acids

23.63

Weight (kDa)

9.76

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	81, 114
AccB1I	GGYRCC	1 cut(s)	154
AciI	CCGC	1 cut(s)	94
AcoI	YGGCCR	1 cut(s)	135
AcyI	GRCGYC	3 cut(s)	78, 111, 439
AfaI	GTAC	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	469
AgeI	ACCGGT	1 cut(s)	500
AgsI	TTSAA	3 cut(s)	14, 91, 623
AjiI	CACGTC	1 cut(s)	470
AjnI	CCWGG	3 cut(s)	114, 132, 477
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	4 cut(s)	85, 102, 292, 518
AluI	AGCT	4 cut(s)	85, 102, 292, 518
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	1 cut(s)	460
AoxI	GGCC	2 cut(s)	135, 222
ApeKI	GCWGC	3 cut(s)	5, 47, 572
AseI	ATTAAT	1 cut(s)	567
AsiGI	ACCGGT	1 cut(s)	500
Asp700I	GAANNNNTTC	1 cut(s)	212
AspS9I	GGNCC	2 cut(s)	223, 392
AsuHPI	GGTGA	3 cut(s)	62, 130, 450
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	154
BauI	CACGAG	2 cut(s)	396, 507
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	2 cut(s)	34, 559
BciT130I	CCWGG	3 cut(s)	116, 134, 479
BcoDI	GTCTC	1 cut(s)	460
BfmI	CTRYAG	1 cut(s)	48
BisI	GCNGC	3 cut(s)	6, 48, 573
BlsI	GCNGC	3 cut(s)	7, 49, 574
Bme1390I	CCNGG	3 cut(s)	116, 134, 479
Bme18I	GGWCC	1 cut(s)	392
BmgBI	CACGTC	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	223, 392
BmiI	GGNNCC	4 cut(s)	30, 42, 156, 583
BmrFI	CCNGG	3 cut(s)	116, 134, 479
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	3 cut(s)	255, 364, 394
BmuI	ACTGGG	1 cut(s)	220
BpmI	CTGGAG	3 cut(s)	15, 118, 447
Bpu10I	CCTNAGC	1 cut(s)	633
BsaHI	GRCGYC	3 cut(s)	78, 111, 439
BsaJI	CCNNGG	2 cut(s)	132, 321
BsaWI	WCCGGW	1 cut(s)	500
Bse118I	RCCGGY	1 cut(s)	500
Bse1I	ACTGG	2 cut(s)	32, 226
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	3 cut(s)	116, 134, 479
BseDI	CCNNGG	2 cut(s)	132, 321
BseGI	GGATG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	32, 226
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	34, 559
BseYI	CCCAGC	1 cut(s)	191
BshFI	GGCC	2 cut(s)	137, 224
BshNI	GGYRCC	1 cut(s)	154
BshTI	ACCGGT	1 cut(s)	500
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	3 cut(s)	26, 38, 501
BsmAI	GTCTC	1 cut(s)	460
BsmBI	CGTCTC	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	2 cut(s)	137, 224
Bsp1286I	GDGCHC	2 cut(s)	233, 508
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	2 cut(s)	137, 224
BspCNI	CTCAG	1 cut(s)	215
BspLI	GGNNCC	4 cut(s)	30, 42, 156, 583
BspMAI	CTGCAG	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	537
BsrFI	RCCGGY	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	32, 226
BssAI	RCCGGY	1 cut(s)	500
BssECI	CCNNGG	2 cut(s)	132, 321
BssNI	GRCGYC	3 cut(s)	78, 111, 439
BssSI	CACGAG	2 cut(s)	396, 507
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	2 cut(s)	396, 507
Bst2UI	CCWGG	3 cut(s)	116, 134, 479
Bst4CI	ACNGT	2 cut(s)	593, 644
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	3 cut(s)	78, 111, 439
BstC8I	GCNNGC	2 cut(s)	159, 318
BstDEI	CTNAG	2 cut(s)	202, 633
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 167
BstNI	CCWGG	3 cut(s)	116, 134, 479
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	3 cut(s)	114, 132, 477
BstSFI	CTRYAG	1 cut(s)	48
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	34, 559
BsuRI	GGCC	2 cut(s)	137, 224
BtgI	CCRYGG	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	4 cut(s)	186, 210, 233, 342
Cac8I	GCNNGC	2 cut(s)	159, 318
Cfr10I	RCCGGY	1 cut(s)	500
Cfr13I	GGNCC	2 cut(s)	223, 392
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	199
CspAI	ACCGGT	1 cut(s)	500
CspCI	CAANNNNNGTGG	2 cut(s)	397, 432
CviAII	CATG	3 cut(s)	295, 317, 322
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	202, 633
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	454
Eco47I	GGWCC	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	114, 132, 477
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	3 cut(s)	298, 320, 325
FaiI	YATR	6 cut(s)	177, 263, 296, 318, 323, 597
FatI	CATG	3 cut(s)	294, 316, 321
Fnu4HI	GCNGC	3 cut(s)	6, 48, 573
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	3 cut(s)	6, 48, 573
GluI	GCNGC	3 cut(s)	6, 48, 573
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	3 cut(s)	15, 118, 447
HaeIII	GGCC	2 cut(s)	137, 224
HapII	CCGG	3 cut(s)	26, 38, 501
HgaI	GACGC	1 cut(s)	428
Hin1I	GRCGYC	3 cut(s)	78, 111, 439
Hin1II	CATG	3 cut(s)	298, 320, 325
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	213, 512
HpaI	GTTAAC	1 cut(s)	475
HpaII	CCGG	3 cut(s)	26, 38, 501
HphI	GGTGA	3 cut(s)	62, 130, 450
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188III	TCNNGA	6 cut(s)	217, 304, 398, 509, 523, 604
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	3 cut(s)	80, 110, 113
HpyAV	CCTTC	2 cut(s)	214, 604
HpyCH4III	ACNGT	2 cut(s)	593, 644
HpyCH4IV	ACGT	4 cut(s)	78, 111, 144, 469
HpyCH4V	TGCA	3 cut(s)	50, 268, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 167
HpyF3I	CTNAG	2 cut(s)	202, 633
HpySE526I	ACGT	4 cut(s)	78, 111, 144, 469
Hsp92I	GRCGYC	3 cut(s)	78, 111, 439
Hsp92II	CATG	3 cut(s)	298, 320, 325
KspAI	GTTAAC	1 cut(s)	475
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	4 cut(s)	28, 34, 46, 99
Lsp1109I	GCAGC	2 cut(s)	34, 559
LweI	GCATC	3 cut(s)	255, 364, 394
MaeII	ACGT	4 cut(s)	78, 111, 144, 469
MaeIII	GTNAC	1 cut(s)	122
MboII	GAAGA	5 cut(s)	79, 285, 298, 413, 619
MhlI	GDGCHC	2 cut(s)	233, 508
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	8 cut(s)	27, 78, 189, 192, 237, 359, 405, 595
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	4 cut(s)	384, 474, 567, 646
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	3 cut(s)	26, 38, 501
MspR9I	CCNGG	3 cut(s)	116, 134, 479
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	3 cut(s)	116, 134, 479
MwoI	GCNNNNNNNGC	2 cut(s)	47, 167
NcoI	CCATGG	1 cut(s)	321
NlaIII	CATG	3 cut(s)	298, 320, 325
NlaIV	GGNNCC	4 cut(s)	30, 42, 156, 583
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	176
PaeI	GCATGC	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	92
PctI	GAATGC	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	1 cut(s)	213
PflFI	GACNNNGTC	1 cut(s)	110
PinAI	ACCGGT	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	7, 49, 574
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	567
Psp6I	CCWGG	3 cut(s)	114, 132, 477
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	3 cut(s)	114, 132, 477
PspN4I	GGNNCC	4 cut(s)	30, 42, 156, 583
PspPI	GGNCC	2 cut(s)	223, 392
PstI	CTGCAG	1 cut(s)	52
PsyI	GACNNNGTC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	1 cut(s)	176
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	384, 474, 567, 646
SatI	GCNGC	3 cut(s)	6, 48, 573
Sau96I	GGNCC	2 cut(s)	223, 392
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	116, 134, 479
SduI	GDGCHC	2 cut(s)	233, 508
SfaNI	GCATC	3 cut(s)	255, 364, 394
SfcI	CTRYAG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	392
SmiMI	CAYNNNNRTG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	320
SsiI	CCGC	1 cut(s)	94
StyD4I	CCNGG	3 cut(s)	114, 132, 477
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	593, 644
TaiI	ACGT	4 cut(s)	81, 114, 147, 472
TaqI	TCGA	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	4 cut(s)	384, 474, 567, 646
Tru9I	TTAA	4 cut(s)	384, 474, 567, 646
TscAI	CASTG	4 cut(s)	193, 210, 233, 349
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	3 cut(s)	5, 47, 572
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	573
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	4 cut(s)	193, 210, 233, 349
Tth111I	GACNNNGTC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	392
VspI	ATTAAT	1 cut(s)	567
XceI	RCATGY	1 cut(s)	320
XmnI	GAANNNNTTC	1 cut(s)	212
ZraI	GACGTC	2 cut(s)	79, 112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.