Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005991.1

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

64471 .. 66204

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005991.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ctgagagccatggcaactgaagttgtagccgatccaatccagcatttccaggaacctcacaacgacgtcaagctcttcaacaagtggagcttcgacgatgttcaggttaatgacatctcacttggagattacattggagtggcccagtccaaacatgcaacttatgtgcctcacactgctgggaggtactcagtgaaacgtttcaggaaagctcaatgccccattgtggagaggcttacaaactcactcatgatgcacgggagaaacaacgggaagaagttgatggctgttaggattgttaggcatgcaatggaaatcatccatttgcttactgatctgaaccccattcaagttattgttgatgctgttgttaacagtggtccacgtgaagatgctactcgtattgggtctgccggagttgttaggcgtcaggctgtggatatctcacctctgagacgggtgaaccaggctatctatctcatcacaactggtgctcgtgaatctgctttcaggaacatcaaaaccattgctgaatgcttggccgatgagcttattaatgctgccaaaggttcctctaacagttatgctatcaagaagaaggatgagattgaaagggttgccaaggccaatcgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

211

Amino Acids

23.57

Weight (kDa)

9.72

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	199
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	540
AcuI	CTGAAG	1 cut(s)	39
AcvI	CACGTG	1 cut(s)	386
AcyI	GRCGYC	2 cut(s)	66, 427
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	79, 350, 611
AjnI	CCWGG	2 cut(s)	48, 465
AluBI	AGCT	4 cut(s)	73, 90, 212, 550
AluI	AGCT	4 cut(s)	73, 90, 212, 550
Alw21I	GWGCWC	1 cut(s)	496
Alw26I	GTCTC	1 cut(s)	448
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	3 cut(s)	141, 540, 624
ApeKI	GCWGC	1 cut(s)	560
AseI	ATTAAT	1 cut(s)	555
Asp700I	GAANNNNTTC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	142, 380
AsuHPI	GGTGA	2 cut(s)	438, 472
AvaII	GGWCC	1 cut(s)	380
BauI	CACGAG	1 cut(s)	495
BbrPI	CACGTG	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	2 cut(s)	50, 467
BcoDI	GTCTC	1 cut(s)	448
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	2 cut(s)	50, 467
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	142, 380
BmiI	GGNNCC	2 cut(s)	54, 571
BmrFI	CCNGG	2 cut(s)	50, 467
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	243, 352, 382
BmuI	ACTGGG	1 cut(s)	139
BsaAI	YACGTR	1 cut(s)	386
BsaHI	GRCGYC	2 cut(s)	66, 427
BsaJI	CCNNGG	2 cut(s)	9, 621
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	145, 493
Bse3DI	GCAATG	2 cut(s)	315, 525
BseBI	CCWGG	2 cut(s)	50, 467
BseDI	CCNNGG	2 cut(s)	9, 621
BseGI	GGATG	2 cut(s)	318, 607
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	2 cut(s)	315, 525
BseMII	CTCAG	2 cut(s)	204, 443
BseNI	ACTGG	2 cut(s)	145, 493
BseXI	GCAGC	1 cut(s)	547
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	3 cut(s)	143, 542, 626
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	448
BsmBI	CGTCTC	1 cut(s)	448
BsmI	GAATGC	1 cut(s)	539
BsnI	GGCC	3 cut(s)	143, 542, 626
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	31, 334
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	3 cut(s)	143, 542, 626
BspCNI	CTCAG	2 cut(s)	203, 444
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	54, 571
BspPI	GGATC	1 cut(s)	26
BspQI	GCTCTTC	1 cut(s)	80
BsrDI	GCAATG	2 cut(s)	315, 525
BsrI	ACTGG	2 cut(s)	145, 493
BssECI	CCNNGG	2 cut(s)	9, 621
BssMI	GATC	2 cut(s)	31, 334
BssNI	GRCGYC	2 cut(s)	66, 427
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	9, 621
Bst2BI	CACGAG	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	50, 467
Bst4CI	ACNGT	2 cut(s)	377, 581
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	2 cut(s)	66, 427
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	2, 190, 452
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	318, 607
BstKTI	GATC	2 cut(s)	34, 337
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	2 cut(s)	31, 334
BstNI	CCWGG	2 cut(s)	50, 467
BstNSI	RCATGY	2 cut(s)	158, 308
BstSCI	CCNGG	2 cut(s)	48, 465
BstV1I	GCAGC	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	143, 542, 626
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	318, 607
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	3 cut(s)	174, 198, 382
Cac8I	GCNNGC	1 cut(s)	306
CciI	TCATGA	1 cut(s)	249
Cfr13I	GGNCC	2 cut(s)	142, 380
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	4 cut(s)	10, 155, 250, 305
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	2, 190, 452
DpnI	GATC	2 cut(s)	33, 336
DpnII	GATC	2 cut(s)	31, 334
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	2 cut(s)	9, 621
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	39
Eco72I	CACGTG	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	48, 465
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	2 cut(s)	9, 621
ErhI	CCWWGG	2 cut(s)	9, 621
Esp3I	CGTCTC	1 cut(s)	448
FaeI	CATG	4 cut(s)	13, 158, 253, 308
FaiI	YATR	6 cut(s)	11, 156, 165, 251, 306, 585
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	4 cut(s)	9, 154, 249, 304
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	2 cut(s)	305, 614
Fsp4HI	GCNGC	1 cut(s)	561
GluI	GCNGC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	183
HaeIII	GGCC	3 cut(s)	143, 542, 626
HapII	CCGG	1 cut(s)	414
HgaI	GACGC	1 cut(s)	416
Hin1I	GRCGYC	2 cut(s)	66, 427
Hin1II	CATG	4 cut(s)	13, 158, 253, 308
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	500
HpaI	GTTAAC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	2 cut(s)	438, 472
Hpy166II	GTNNAC	3 cut(s)	373, 383, 463
Hpy188I	TCNGA	2 cut(s)	339, 453
Hpy188III	TCNNGA	5 cut(s)	205, 250, 497, 511, 592
Hpy8I	GTNNAC	3 cut(s)	373, 383, 463
Hpy99I	CGWCG	2 cut(s)	68, 98
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	2 cut(s)	377, 581
HpyCH4IV	ACGT	3 cut(s)	66, 199, 385
HpyCH4V	TGCA	3 cut(s)	158, 256, 308
HpyF3I	CTNAG	3 cut(s)	2, 190, 452
HpySE526I	ACGT	3 cut(s)	66, 199, 385
Hsp92I	GRCGYC	2 cut(s)	66, 427
Hsp92II	CATG	4 cut(s)	13, 158, 253, 308
KspAI	GTTAAC	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	31, 334
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	3 cut(s)	243, 352, 382
MaeII	ACGT	3 cut(s)	66, 199, 385
MalI	GATC	2 cut(s)	33, 336
MboI	GATC	2 cut(s)	31, 334
MboII	GAAGA	4 cut(s)	67, 286, 401, 607
MhlI	GDGCHC	1 cut(s)	496
MnlI	CCTC	6 cut(s)	66, 177, 180, 225, 459, 583
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	4 cut(s)	108, 372, 555, 634
MslI	CAYNNNNRTG	1 cut(s)	137
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	2 cut(s)	50, 467
Mva1269I	GAATGC	1 cut(s)	539
MvaI	CCWGG	2 cut(s)	50, 467
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	31, 334
NlaIII	CATG	4 cut(s)	13, 158, 253, 308
NlaIV	GGNNCC	2 cut(s)	54, 571
NspI	RCATGY	2 cut(s)	158, 308
PaeI	GCATGC	1 cut(s)	308
PagI	TCATGA	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	1 cut(s)	539
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	500
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	1 cut(s)	562
PmaCI	CACGTG	1 cut(s)	386
PmlI	CACGTG	1 cut(s)	386
Ppu21I	YACGTR	1 cut(s)	386
PshBI	ATTAAT	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	48, 465
PspCI	CACGTG	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	2 cut(s)	48, 465
PspN4I	GGNNCC	2 cut(s)	54, 571
PspPI	GGNCC	2 cut(s)	142, 380
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	108, 372, 555, 634
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	2 cut(s)	31, 334
Sau96I	GGNCC	2 cut(s)	142, 380
ScrFI	CCNGG	2 cut(s)	50, 467
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	3 cut(s)	243, 352, 382
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	137
SphI	GCATGC	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	48, 465
StyI	CCWWGG	2 cut(s)	9, 621
TaaI	ACNGT	2 cut(s)	377, 581
TaiI	ACGT	3 cut(s)	69, 202, 388
TaqI	TCGA	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	500
Tru1I	TTAA	4 cut(s)	108, 372, 555, 634
Tru9I	TTAA	4 cut(s)	108, 372, 555, 634
TscAI	CASTG	3 cut(s)	181, 198, 382
TseI	GCWGC	1 cut(s)	560
TspRI	CASTG	3 cut(s)	181, 198, 382
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	555
XceI	RCATGY	2 cut(s)	158, 308
XmnI	GAANNNNTTC	1 cut(s)	200
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.