Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Forward (+)

4621415 .. 4623167

Gene Structure 1753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1048600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTTAGAATTCTGTGTGACCTCCTTGTGGCGTATTGTGTCAGTGACATTTCACTGGCGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACTTATGTACCTCACACTGCTGGGAGATACTCGGTCAAACGATTCAGGAAAGCTCAGTGCCCTATTGTGGAGAGGCTTACAAACTCACTCATGATGCACGGCAGAAACAATGGAAAGAAACTCATGGCTGTCAGGATTGTTAGGCACGCGATGGAAATTATCCATTTGCTAACTGATCTGAACCCAATCCAAGTTATTGTTGATGCTGTCGTTAACAGTGGTCCACGTGAAGATGCAACTCGTATTGGATCTGCTGGAGTTGTTAGGCGTCAGGCTGTGGATATCTCACCTTTGAGGCGTGTGAATCAGGCTATCTATCTCCTCACCACCGGTGCTCGTGAATCTGCTTTCAGGAACGTCAAAACTATTGCCGAGTGTTTGGCTGATGAACTTATTAATGCTGCCAAGGGTTCATCTAACAGTTATGCAATCAAGAAGAAGGATGAGATCGAAAGAGTTGCCAAGGCCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

190

Amino Acids

20.94

Weight (kDa)

9.88

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	29 - 189	9.7e-42	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	242
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	9
AcvI	CACGTG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	28, 160
AgeI	ACCGGT	1 cut(s)	422
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	430
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	558
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	1 cut(s)	9
AseI	ATTAAT	1 cut(s)	489
AsiGI	ACCGGT	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	372, 409
AvaII	GGWCC	1 cut(s)	314
BaeGI	GKGCMC	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	84, 117
BauI	CACGAG	1 cut(s)	429
BbrPI	CACGTG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmsI	GCATC	3 cut(s)	177, 286, 316
BpmI	CTGGAG	1 cut(s)	369
BsaAI	YACGTR	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	361
BsaJI	CCNNGG	2 cut(s)	498, 555
BsaWI	WCCGGW	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 160
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	60
BseDI	CCNNGG	2 cut(s)	498, 555
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	28, 160
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	404
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	560
BshTI	ACCGGT	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	423
BslI	CCNNNNNNNGG	2 cut(s)	28, 160
BsnI	GGCC	1 cut(s)	560
Bsp1286I	GDGCHC	2 cut(s)	155, 430
Bsp143I	GATC	3 cut(s)	268, 341, 540
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	560
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	242
BspHI	TCATGA	1 cut(s)	183
BspPI	GGATC	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	60
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	2 cut(s)	498, 555
BssMI	GATC	3 cut(s)	268, 341, 540
BssNI	GRCGYC	1 cut(s)	361
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	498, 555
Bst2BI	CACGAG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	311, 515, 566
BstACI	GRCGYC	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	90, 240
BstDEI	CTNAG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	3 cut(s)	271, 344, 543
BstMBI	GATC	3 cut(s)	268, 341, 540
BstNSI	RCATGY	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	155
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	560
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	5 cut(s)	49, 53, 108, 155, 316
Cac8I	GCNNGC	2 cut(s)	90, 240
CciI	TCATGA	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	1 cut(s)	101
CspAI	ACCGGT	1 cut(s)	422
CviAII	CATG	3 cut(s)	89, 184, 217
CviJI	RGCY	7 cut(s)	146, 169, 221, 368, 404, 476, 560
CviKI_1	RGCY	7 cut(s)	146, 169, 221, 368, 404, 476, 560
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	3 cut(s)	270, 343, 542
DpnII	GATC	3 cut(s)	268, 341, 540
EciI	GGCGGA	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	498, 555
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	314
Eco72I	CACGTG	1 cut(s)	320
EcoRI	GAATTC	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	498, 555
ErhI	CCWWGG	2 cut(s)	498, 555
FaeI	CATG	3 cut(s)	92, 187, 220
FaiI	YATR	5 cut(s)	90, 99, 185, 218, 519
FatI	CATG	3 cut(s)	88, 183, 216
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	495
GluI	GCNGC	1 cut(s)	495
GsaI	CCCAGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	560
HapII	CCGG	1 cut(s)	423
HgaI	GACGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	92, 187, 220
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	3 cut(s)	135, 397, 434
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	423
HphI	GGTGA	2 cut(s)	372, 409
Hpy166II	GTNNAC	2 cut(s)	307, 317
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	6 cut(s)	139, 184, 226, 431, 445, 526
Hpy8I	GTNNAC	2 cut(s)	307, 317
HpyAV	CCTTC	2 cut(s)	90, 526
HpyCH4III	ACNGT	3 cut(s)	311, 515, 566
HpyCH4IV	ACGT	2 cut(s)	319, 450
HpyCH4V	TGCA	5 cut(s)	77, 92, 190, 329, 521
HpyF3I	CTNAG	1 cut(s)	147
HpySE526I	ACGT	2 cut(s)	319, 450
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	3 cut(s)	92, 187, 220
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	268, 341, 540
LpnPI	CCDG	9 cut(s)	41, 99, 124, 211, 333, 350, 386, 430, 436
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	3 cut(s)	177, 286, 316
MaeII	ACGT	2 cut(s)	319, 450
MaeIII	GTNAC	2 cut(s)	17, 44
MalI	GATC	3 cut(s)	270, 343, 542
MboI	GATC	3 cut(s)	268, 341, 540
MboII	GAAGA	2 cut(s)	335, 541
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	2 cut(s)	155, 430
MluCI	AATT	2 cut(s)	9, 249
MnlI	CCTC	5 cut(s)	32, 114, 159, 381, 425
MseI	TTAA	3 cut(s)	306, 489, 568
MspI	CCGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	242
NdeII	GATC	3 cut(s)	268, 341, 540
NlaIII	CATG	3 cut(s)	92, 187, 220
NmeAIII	GCCGAG	1 cut(s)	490
NmuCI	GTSAC	2 cut(s)	17, 44
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PagI	TCATGA	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	135, 397, 434
PinAI	ACCGGT	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	496
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
Ppu21I	YACGTR	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	489
PspCI	CACGTG	1 cut(s)	320
PspFI	CCCAGC	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	306, 489, 568
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	3 cut(s)	268, 341, 540
Sau96I	GGNCC	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	155, 430
SetI	ASST	7 cut(s)	24, 82, 106, 148, 322, 385, 453
SfaNI	GCATC	3 cut(s)	177, 286, 316
SgrAI	CRCCGGYG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	314
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	2 cut(s)	9, 249
SsiI	CCGC	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	498, 555
TaaI	ACNGT	3 cut(s)	311, 515, 566
TaiI	ACGT	2 cut(s)	322, 453
TaqI	TCGA	1 cut(s)	543
TaqII	GACCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	9, 249
TfiI	GAWTC	3 cut(s)	135, 397, 434
Tru1I	TTAA	3 cut(s)	306, 489, 568
Tru9I	TTAA	3 cut(s)	306, 489, 568
TscAI	CASTG	5 cut(s)	49, 60, 115, 155, 316
TseFI	GTSAC	2 cut(s)	17, 44
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	2 cut(s)	17, 44
TspDTI	ATGAA	2 cut(s)	495, 495
TspRI	CASTG	5 cut(s)	49, 60, 115, 155, 316
VpaK11BI	GGWCC	1 cut(s)	314
VspI	ATTAAT	1 cut(s)	489
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.