Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

26105136 .. 26107247

Gene Structure 2112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAACTGAAGTTGTAGCCGATCCAATCCAGCATTTCCAGGAACCTCACAACGACGTCAAGCTCTTCAACAAGTGGAGCTTTGACGATGTTCAGGTCAGTGACATCTCACTTGGAGATTACATTGGAGTGGCCCAGTCCAAACATGCAACTTATGTGCCTCACACTGCTGGGAGGTACTCAGTGAAACGTTTCAGGAAAGCTCAATGCCCCATTGTGGAGAGGCTTACAAACTCACTCATGATGCACGGGAGAAACAACGGGAAGAAGTTGATGGCTGTTAGGATTGTTAGGCATGCAATGGAAATCATCCATTTGCTTACTGATCTGAACCCCATTCAAGTTATTGTTGATGCTGTTGTTAACAGTGGTCCACGTGAAGATGCTACCCGTATTGGGTCTGCCGGAGTTGTTAGGCGTCAGGCTGTGGATATCTCACCTCTGAGACGGGTGAACCAGGCTATCTATCTCATCACAACTGGTGCTCGTGAGTCTGCTTTCAGGAACATCAAAACCATTGCTGAATGCTTGGCCGATGAGCTTATTAATGCTGCCAAAGGTTCCTCTAACAGTTATGCTATCAAGAAGAAGGATGAGATTGAAAGGGTTGCCAAGGCCAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

208

Amino Acids

23.2

Weight (kDa)

9.62

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	48 - 208	1e-41	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AclI	AACGTT	1 cut(s)	190
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	30
AcvI	CACGTG	1 cut(s)	377
AcyI	GRCGYC	2 cut(s)	57, 418
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	217, 396
AgsI	TTSAA	3 cut(s)	70, 341, 602
AjnI	CCWGG	2 cut(s)	39, 456
AluBI	AGCT	4 cut(s)	64, 81, 203, 541
AluI	AGCT	4 cut(s)	64, 81, 203, 541
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	3 cut(s)	132, 531, 615
ApeKI	GCWGC	1 cut(s)	551
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	2 cut(s)	133, 371
AsuHPI	GGTGA	2 cut(s)	429, 463
AvaII	GGWCC	1 cut(s)	371
BauI	CACGAG	1 cut(s)	486
BbrPI	CACGTG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	2 cut(s)	41, 458
BcoDI	GTCTC	1 cut(s)	439
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	2 cut(s)	41, 458
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	133, 371
BmiI	GGNNCC	2 cut(s)	45, 562
BmrFI	CCNGG	2 cut(s)	41, 458
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	3 cut(s)	234, 343, 373
BmuI	ACTGGG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	377
BsaHI	GRCGYC	2 cut(s)	57, 418
BsaJI	CCNNGG	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 396
Bse1I	ACTGG	2 cut(s)	136, 484
Bse3DI	GCAATG	2 cut(s)	306, 516
BseBI	CCWGG	2 cut(s)	41, 458
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	2 cut(s)	309, 598
BseLI	CCNNNNNNNGG	2 cut(s)	217, 396
BseMI	GCAATG	2 cut(s)	306, 516
BseMII	CTCAG	2 cut(s)	195, 434
BseNI	ACTGG	2 cut(s)	136, 484
BseXI	GCAGC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	3 cut(s)	134, 533, 617
BsiHKAI	GWGCWC	1 cut(s)	487
BsiSI	CCGG	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	217, 396
BsmAI	GTCTC	1 cut(s)	439
BsmBI	CGTCTC	1 cut(s)	439
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	134, 533, 617
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	22, 325
BspANI	GGCC	3 cut(s)	134, 533, 617
BspCNI	CTCAG	2 cut(s)	194, 435
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	45, 562
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	306, 516
BsrI	ACTGG	2 cut(s)	136, 484
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	2 cut(s)	22, 325
BssNI	GRCGYC	2 cut(s)	57, 418
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	41, 458
Bst4CI	ACNGT	2 cut(s)	368, 572
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	2 cut(s)	57, 418
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	2 cut(s)	181, 443
BstF5I	GGATG	2 cut(s)	309, 598
BstKTI	GATC	2 cut(s)	25, 328
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	2 cut(s)	22, 325
BstNI	CCWGG	2 cut(s)	41, 458
BstNSI	RCATGY	2 cut(s)	149, 299
BstSCI	CCNGG	2 cut(s)	39, 456
BstV1I	GCAGC	1 cut(s)	538
BsuRI	GGCC	3 cut(s)	134, 533, 617
BtsCI	GGATG	2 cut(s)	309, 598
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	4 cut(s)	106, 165, 189, 373
Cac8I	GCNNGC	1 cut(s)	297
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	133, 371
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	3 cut(s)	146, 241, 296
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	181, 443
DpnI	GATC	2 cut(s)	24, 327
DpnII	GATC	2 cut(s)	22, 325
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	30
Eco72I	CACGTG	1 cut(s)	377
EcoRII	CCWGG	2 cut(s)	39, 456
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	3 cut(s)	149, 244, 299
FaiI	YATR	5 cut(s)	147, 156, 242, 297, 576
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	3 cut(s)	145, 240, 295
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	2 cut(s)	296, 605
Fsp4HI	GCNGC	1 cut(s)	552
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	3 cut(s)	134, 533, 617
HapII	CCGG	1 cut(s)	405
HgaI	GACGC	1 cut(s)	407
Hin1I	GRCGYC	2 cut(s)	57, 418
Hin1II	CATG	3 cut(s)	149, 244, 299
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	1 cut(s)	491
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	2 cut(s)	429, 463
Hpy166II	GTNNAC	3 cut(s)	364, 374, 454
Hpy188I	TCNGA	2 cut(s)	330, 444
Hpy188III	TCNNGA	5 cut(s)	196, 241, 488, 502, 583
Hpy8I	GTNNAC	3 cut(s)	364, 374, 454
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	583
HpyCH4III	ACNGT	2 cut(s)	368, 572
HpyCH4IV	ACGT	3 cut(s)	57, 190, 376
HpyCH4V	TGCA	3 cut(s)	149, 247, 299
HpyF3I	CTNAG	2 cut(s)	181, 443
HpySE526I	ACGT	3 cut(s)	57, 190, 376
Hsp92I	GRCGYC	2 cut(s)	57, 418
Hsp92II	CATG	3 cut(s)	149, 244, 299
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	22, 325
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	3 cut(s)	234, 343, 373
MaeII	ACGT	3 cut(s)	57, 190, 376
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	24, 327
MboI	GATC	2 cut(s)	22, 325
MboII	GAAGA	4 cut(s)	58, 277, 392, 598
MhlI	GDGCHC	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	6 cut(s)	57, 168, 171, 216, 450, 574
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	3 cut(s)	363, 546, 625
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	41, 458
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	2 cut(s)	41, 458
NdeII	GATC	2 cut(s)	22, 325
NlaIII	CATG	3 cut(s)	149, 244, 299
NlaIV	GGNNCC	2 cut(s)	45, 562
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	2 cut(s)	149, 299
PaeI	GCATGC	1 cut(s)	299
PagI	TCATGA	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	71
PctI	GAATGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	499
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	377
PshBI	ATTAAT	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	39, 456
PspCI	CACGTG	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	2 cut(s)	39, 456
PspN4I	GGNNCC	2 cut(s)	45, 562
PspPI	GGNCC	2 cut(s)	133, 371
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	363, 546, 625
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	2 cut(s)	22, 325
Sau96I	GGNCC	2 cut(s)	133, 371
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	2 cut(s)	41, 458
SduI	GDGCHC	1 cut(s)	487
SfaNI	GCATC	3 cut(s)	234, 343, 373
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	128
SphI	GCATGC	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	39, 456
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	368, 572
TaiI	ACGT	3 cut(s)	60, 193, 379
Tru1I	TTAA	3 cut(s)	363, 546, 625
Tru9I	TTAA	3 cut(s)	363, 546, 625
TscAI	CASTG	4 cut(s)	106, 172, 189, 373
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	101
TspRI	CASTG	4 cut(s)	106, 172, 189, 373
VpaK11BI	GGWCC	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	546
XceI	RCATGY	2 cut(s)	149, 299
XmnI	GAANNNNTTC	1 cut(s)	191
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.