Rw0G008510

Belongs to the universal ribosomal protein uS7 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00323
Physical Location & Seq
Reverse (-)
43349 .. 44299
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008510.1

Sequence Viewer

Length: 462 bp
ATGCATTTCTTTCCTGTACCACCTCCAAATGTGGTGGAGCTTATATCCCTTGATTGTACTCAGTCAAACGAGTTAGGAAAGCCCAATGCTGAAACTTATAAACTCGCTAATGAAGCACGGGAGAAACAACGGGAAGAAACTGATTGCCATGTCATTAATATTAGGCACGCAATGGAGATTACCGATTTTCTAACTGATTTGAACCCCATCAATGTTATTGTCGACGCTGATGTCAATATTGTGGATATCTCACTATTGAGATCGATGTGTGAATCAGTTTGCTTTAGAAACATAAAAACTATTTCCGAATGTTTGGCTGATGAAGTTATTAATGCTAAGGATGAGATTGAAAGAGTCGGCAAGGCCAAACGTGGAGGCATTGATCGAAGAGCACTTTATTTCAACAAGGTGGGCTGCATGCATGACTGCTTGTGTTTATTTTACAATAATTTATCTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

153

Amino Acids

17.37

Weight (kDa)

5.08

Isoelectric Point (pI)

64.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 99
AasI GACNNNNNNGTC 1 cut(s) 230
AccI GTMKAC 1 cut(s) 222
AfaI GTAC 2 cut(s) 18, 58
AgsI TTSAA 3 cut(s) 202, 350, 403
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 394
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 1 cut(s) 414
AseI ATTAAT 2 cut(s) 156, 330
Bbv12I GWGCWC 1 cut(s) 394
BbvI GCAGC 1 cut(s) 401
BccI CCATC 1 cut(s) 215
BisI GCNGC 1 cut(s) 415
BlsI GCNGC 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 263
Bse3DI GCAATG 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 263
BseGI GGATG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 401
BshFI GGCC 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 394
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 2 cut(s) 260, 382
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 177
BssMI GATC 2 cut(s) 260, 382
Bst6I CTCTTC 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 168, 419
BstDEI CTNAG 2 cut(s) 60, 336
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 2 cut(s) 263, 385
BstMBI GATC 2 cut(s) 260, 382
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 401
Bsu15I ATCGAT 1 cut(s) 263
BsuRI GGCC 1 cut(s) 365
BsuTUI ATCGAT 1 cut(s) 263
BtsCI GGATG 1 cut(s) 346
Cac8I GCNNGC 2 cut(s) 168, 419
ClaI ATCGAT 1 cut(s) 263
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 17, 57
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviAII CATG 3 cut(s) 149, 418, 422
CviJI RGCY 5 cut(s) 40, 82, 317, 365, 414
CviKI_1 RGCY 5 cut(s) 40, 82, 317, 365, 414
CviQI GTAC 2 cut(s) 17, 57
DdeI CTNAG 2 cut(s) 60, 336
DpnI GATC 2 cut(s) 262, 384
DpnII GATC 2 cut(s) 260, 382
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
Eco32I GATATC 1 cut(s) 247
EcoRV GATATC 1 cut(s) 247
EcoT22I ATGCAT 2 cut(s) 6, 423
FaeI CATG 3 cut(s) 152, 421, 425
FaiI YATR 6 cut(s) 44, 99, 150, 293, 419, 423
FatI CATG 3 cut(s) 148, 417, 421
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 415
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 415
GluI GCNGC 1 cut(s) 415
HaeIII GGCC 1 cut(s) 365
HgaI GACGC 1 cut(s) 233
Hin1II CATG 3 cut(s) 152, 421, 425
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 272, 354
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 3 cut(s) 4, 417, 421
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 60, 336
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 3 cut(s) 152, 421, 425
Kzo9I GATC 2 cut(s) 260, 382
LguI GCTCTTC 1 cut(s) 382
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 1 cut(s) 27
Lsp1109I GCAGC 1 cut(s) 401
MaeII ACGT 1 cut(s) 370
MalI GATC 2 cut(s) 262, 384
MboI GATC 2 cut(s) 260, 382
MboII GAAGA 2 cut(s) 146, 399
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 1 cut(s) 448
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 2 cut(s) 33, 368
Mph1103I ATGCAT 2 cut(s) 6, 423
MseI TTAA 2 cut(s) 156, 330
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 2 cut(s) 260, 382
NlaIII CATG 3 cut(s) 152, 421, 425
NsiI ATGCAT 2 cut(s) 6, 423
NspI RCATGY 1 cut(s) 421
PaeI GCATGC 1 cut(s) 421
PciSI GCTCTTC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 416
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PshBI ATTAAT 2 cut(s) 156, 330
PsiI TTATAA 1 cut(s) 99
RsaI GTAC 2 cut(s) 18, 58
RsaNI GTAC 2 cut(s) 17, 57
SalI GTCGAC 1 cut(s) 221
SapI GCTCTTC 1 cut(s) 382
SaqAI TTAA 2 cut(s) 156, 330
SatI GCNGC 1 cut(s) 415
Sau3AI GATC 2 cut(s) 260, 382
SchI GAGTC 1 cut(s) 363
SduI GDGCHC 1 cut(s) 394
SetI ASST 4 cut(s) 25, 42, 373, 411
SphI GCATGC 1 cut(s) 421
Sse9I AATT 1 cut(s) 448
SspI AATATT 2 cut(s) 160, 238
TaiI ACGT 1 cut(s) 373
TaqI TCGA 3 cut(s) 222, 263, 385
TasI AATT 1 cut(s) 448
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 156, 330
Tru9I TTAA 2 cut(s) 156, 330
TseI GCWGC 1 cut(s) 414
TspDTI ATGAA 2 cut(s) 126, 336
VspI ATTAAT 2 cut(s) 156, 330
XceI RCATGY 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 222
Zsp2I ATGCAT 2 cut(s) 6, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.