Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

3705690 .. 3707639

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03850.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACATGTGGTGAATTGTTATGGGACTTGTCTGGTAACACCAAAACCCAAACCCTAGTACTTGACCAAAAAAGAAAAAAAAAAAAAAAAACCCAAAACCCTAGTAGATCGATCACTTGTATCCTGCGCCGCTTTGTTGTCTCCTCCAAGCTCTCCTACCCTCCTCTGAAACTCCAACCTCCAGAAACCATGGCCGCTGCTGATGTAGCTGCTCCTGCATTGGAACCAACGCAGCCGCACTATGATGTCAAGCTCTTCAACCGCTGGAGCTTCGACGATGTCCAGGTCAGTGACATTTCACTGGCAGATTACATTGGAGTTGCACCTTCCAAGCATGCAACTTATGTACCTCACACTGCTGGAAGATACTCGGTCAAACGATTCAGGAAAGCTCAGTGCCCTATTGTGGAGAGGCTTACAAACTCACTCATGATGCACGGGAGAAACAATGGAAAGAAACTTATGGCTGTCAGGATCATTAGGCATGCGATGGAAATTATCCATTTGCTATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

173

Amino Acids

19.48

Weight (kDa)

10.01

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	130, 195, 236, 262
AclWI	GGATC	1 cut(s)	482
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	2 cut(s)	60, 348
AfiI	CCNNNNNNNGG	1 cut(s)	406
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	259
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	5 cut(s)	151, 209, 253, 270, 392
AluI	AGCT	5 cut(s)	151, 209, 253, 270, 392
Alw26I	GTCTC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	197, 209, 232
AspLEI	GCGC	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	401
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BbvI	GCAGC	3 cut(s)	184, 196, 244
BccI	CCATC	1 cut(s)	484
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	2 cut(s)	56, 102
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	6 cut(s)	130, 195, 198, 210, 233, 236
BlsI	GCNGC	6 cut(s)	131, 196, 199, 211, 234, 237
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	284
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	423
BpmI	CTGGAG	2 cut(s)	165, 286
Bsa29I	ATCGAT	2 cut(s)	110, 512
BsaJI	CCNNGG	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	284
BseCI	ATCGAT	2 cut(s)	110, 512
BseDI	CCNNGG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	133, 153
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	3 cut(s)	184, 196, 244
BshFI	GGCC	1 cut(s)	194
BshVI	ATCGAT	2 cut(s)	110, 512
BslFI	GGGAC	1 cut(s)	38
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	107, 111, 474, 513
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	4 cut(s)	130, 195, 236, 262
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	2 cut(s)	110, 512
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	482
BspQI	GCTCTTC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	4 cut(s)	107, 111, 474, 513
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	284
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	336, 486
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	4 cut(s)	110, 114, 477, 516
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	4 cut(s)	107, 111, 474, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 215
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	3 cut(s)	9, 338, 488
BstSCI	CCNGG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	184, 196, 244
Bsu15I	ATCGAT	2 cut(s)	110, 512
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	2 cut(s)	110, 512
BtgI	CCRYGG	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	503
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	4 cut(s)	295, 299, 354, 401
Cac8I	GCNNGC	2 cut(s)	336, 486
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	1 cut(s)	129
ClaI	ATCGAT	2 cut(s)	110, 512
Csp6I	GTAC	2 cut(s)	59, 347
CviAII	CATG	5 cut(s)	6, 190, 335, 430, 485
CviJI	RGCY	9 cut(s)	151, 194, 209, 235, 253, 270, 392, 415, 467
CviKI_1	RGCY	9 cut(s)	151, 194, 209, 235, 253, 270, 392, 415, 467
CviQI	GTAC	2 cut(s)	59, 347
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	4 cut(s)	109, 113, 476, 515
DpnII	GATC	4 cut(s)	107, 111, 474, 513
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	5 cut(s)	9, 193, 338, 433, 488
FaiI	YATR	9 cut(s)	7, 22, 191, 243, 336, 345, 431, 464, 486
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	5 cut(s)	5, 189, 334, 429, 484
Fnu4HI	GCNGC	6 cut(s)	130, 195, 198, 210, 233, 236
Fsp4HI	GCNGC	6 cut(s)	130, 195, 198, 210, 233, 236
FspBI	CTAG	2 cut(s)	56, 102
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	6 cut(s)	130, 195, 198, 210, 233, 236
GsuI	CTGGAG	2 cut(s)	165, 286
HaeIII	GGCC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	5 cut(s)	9, 193, 338, 433, 488
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	381
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	2 cut(s)	168, 518
Hpy188III	TCNNGA	4 cut(s)	182, 385, 430, 472
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	336
HpyCH4V	TGCA	4 cut(s)	218, 323, 338, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 215
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	5 cut(s)	9, 193, 338, 433, 488
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	4 cut(s)	107, 111, 474, 513
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	2 cut(s)	217, 267
Lsp1109I	GCAGC	3 cut(s)	184, 196, 244
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	56, 102
MaeIII	GTNAC	2 cut(s)	35, 290
MalI	GATC	4 cut(s)	109, 113, 476, 515
MboI	GATC	4 cut(s)	107, 111, 474, 513
MboII	GAAGA	2 cut(s)	247, 375
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	2 cut(s)	14, 495
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	6 cut(s)	154, 171, 174, 189, 360, 405
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	2 cut(s)	197, 264
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	206, 215
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	107, 111, 474, 513
NlaIII	CATG	5 cut(s)	9, 193, 338, 433, 488
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	290
NspI	RCATGY	3 cut(s)	9, 338, 488
PaeI	GCATGC	2 cut(s)	338, 488
PagI	TCATGA	1 cut(s)	429
PciI	ACATGT	1 cut(s)	5
PciSI	GCTCTTC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	381
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	6 cut(s)	131, 196, 199, 211, 234, 237
PscI	ACATGT	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	225
PsyI	GACNNNGTC	1 cut(s)	278
RsaI	GTAC	2 cut(s)	60, 348
RsaNI	GTAC	2 cut(s)	59, 347
RseI	CAYNNNNRTG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	260
SatI	GCNGC	6 cut(s)	130, 195, 198, 210, 233, 236
Sau3AI	GATC	4 cut(s)	107, 111, 474, 513
ScaI	AGTACT	1 cut(s)	60
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	9 cut(s)	153, 181, 211, 255, 272, 288, 328, 352, 394
SfaNI	GCATC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	243
SphI	GCATGC	2 cut(s)	338, 488
Sse9I	AATT	2 cut(s)	14, 495
SsiI	CCGC	4 cut(s)	130, 195, 236, 262
SspMI	CTAG	2 cut(s)	56, 102
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	189
TaqI	TCGA	3 cut(s)	110, 273, 512
TaqII	GACCGA	1 cut(s)	361
TasI	AATT	2 cut(s)	14, 495
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	3 cut(s)	132, 197, 238
TfiI	GAWTC	1 cut(s)	381
TscAI	CASTG	4 cut(s)	295, 306, 361, 401
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	3 cut(s)	197, 209, 232
Tsp45I	GTSAC	1 cut(s)	290
TspRI	CASTG	4 cut(s)	295, 306, 361, 401
Tth111I	GACNNNGTC	1 cut(s)	278
XceI	RCATGY	3 cut(s)	9, 338, 488
XspI	CTAG	2 cut(s)	56, 102
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.