Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

21263458 .. 21264382

Gene Structure 925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g26500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCCGCCGTCGTCGAATCTGCCCCCGTTGCCCAAGAGATCATTCTGCCCCACAACGACGTTAAGCTCTTCAACCGCTGGACCTTCGAGGGCGTCGAGGTCACCGACCTCTCGCTGCAAGATTACATCGGCGTCAATCAAGCGAAGCACGCCACGTATGTGCCCCACACCGCCGGGAGGTACTCGGTGAAGCGGTTCAGGAAGGCTCAATGCCCTATCGTTGAGAGGCTCACCAACTCTCTCATGATGCACGGAAGGAACAACGGGAAGAAGCTCATGGCTGTTAGGATCGTCAGGCACGCAATGGAGATCATCCATTTGCTCACTGACCTTAACCCTATCCAGGTCATCGTCGACGCTGTTGTTAACAGTGGTCCTAGGGAAGATGCAACCCGAATTGGGTCTGCTGGTGTTGTGAGGCGGCAGGCTGTTGATATTTCTCCCCTCAGACGTGTCAATCAGGCCATTTATCTGCTGACCACCGGGGCTCGTGAGTCAGCTTTCAGGAATATCAAGACTATTGCAGAGTGCTTGGCTGATGAGCTGATCAATGCTGCTAAAGGGTCCTCTAACAGCTATGCTATTAAGAAGAAGGACGAGATTGAGAGAGTTGCCAAGGCCAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

210

Amino Acids

23.24

Weight (kDa)

9.76

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	47 - 209	9e-42	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	5 cut(s)	6, 76, 171, 193, 421
AclWI	GGATC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	2 cut(s)	93, 132
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	177, 343, 399
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	73
AjiI	CACGTC	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	5 cut(s)	67, 274, 500, 544, 576
AluI	AGCT	5 cut(s)	67, 274, 500, 544, 576
AlwI	GGATC	1 cut(s)	296
AoxI	GGCC	3 cut(s)	3, 462, 618
ApeKI	GCWGC	2 cut(s)	115, 554
Asp700I	GAANNNNTTC	1 cut(s)	194
AspA2I	CCTAGG	1 cut(s)	377
AspS9I	GGNCC	3 cut(s)	81, 374, 564
AsuC2I	CCSGG	2 cut(s)	175, 484
AsuHPI	GGTGA	3 cut(s)	94, 199, 223
AvaII	GGWCC	3 cut(s)	81, 374, 564
AvrII	CCTAGG	1 cut(s)	377
BaeGI	GKGCMC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	490
BauI	CACGAG	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	102, 541
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	2 cut(s)	175, 484
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	4 cut(s)	6, 116, 422, 555
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	4 cut(s)	7, 117, 423, 556
Bme1390I	CCNGG	3 cut(s)	175, 344, 484
Bme18I	GGWCC	3 cut(s)	81, 374, 564
BmgBI	CACGTC	1 cut(s)	452
BmgT120I	GGNCC	3 cut(s)	81, 374, 564
BmiI	GGNNCC	1 cut(s)	565
BmrFI	CCNGG	3 cut(s)	175, 344, 484
BmsI	GCATC	2 cut(s)	237, 376
BpuMI	CCSGG	2 cut(s)	175, 484
BsaAI	YACGTR	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	93, 132
BsaJI	CCNNGG	3 cut(s)	377, 483, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 343, 399
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	377, 483, 615
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	3 cut(s)	177, 343, 399
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	460
BseSI	GKGCMC	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	102, 541
BshFI	GGCC	3 cut(s)	5, 464, 620
BsiSI	CCGG	2 cut(s)	174, 483
BslI	CCNNNNNNNGG	3 cut(s)	177, 343, 399
BsnI	GGCC	3 cut(s)	5, 464, 620
Bsp1286I	GDGCHC	2 cut(s)	165, 490
Bsp143I	GATC	4 cut(s)	39, 288, 309, 546
BspACI	CCGC	5 cut(s)	6, 76, 171, 193, 421
BspANI	GGCC	3 cut(s)	5, 464, 620
BspCNI	CTCAG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	565
BspPI	GGATC	1 cut(s)	296
BspQI	GCTCTTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	3 cut(s)	377, 483, 615
BssMI	GATC	4 cut(s)	39, 288, 309, 546
BssNI	GRCGYC	2 cut(s)	93, 132
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	377, 615
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	2 cut(s)	93, 132
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	150, 300, 426
BstDEI	CTNAG	1 cut(s)	446
BstEII	GGTNACC	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	4 cut(s)	42, 291, 312, 549
BstMBI	GATC	4 cut(s)	39, 288, 309, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 149
BstNI	CCWGG	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	100
BstSCI	CCNGG	3 cut(s)	173, 342, 482
BstSLI	GKGCMC	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	102, 541
BsuRI	GGCC	3 cut(s)	5, 464, 620
BtrI	CACGTC	1 cut(s)	452
BtsCI	GGATG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	324, 376
Cac8I	GCNNGC	3 cut(s)	150, 300, 426
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	81, 374, 564
CseI	GACGC	3 cut(s)	82, 121, 365
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	2 cut(s)	244, 277
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	4 cut(s)	41, 290, 311, 548
DpnII	GATC	4 cut(s)	39, 288, 309, 546
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	377, 615
Eco24I	GRGCYC	1 cut(s)	490
Eco47I	GGWCC	3 cut(s)	81, 374, 564
Eco91I	GGTNACC	1 cut(s)	100
EcoO109I	RGGNCCY	1 cut(s)	564
EcoO65I	GGTNACC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	2 cut(s)	377, 615
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	2 cut(s)	377, 615
FaeI	CATG	2 cut(s)	247, 280
FaiI	YATR	4 cut(s)	159, 245, 278, 579
FatI	CATG	2 cut(s)	243, 276
FbaI	TGATCA	1 cut(s)	546
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	4 cut(s)	6, 116, 422, 555
FokI	GGATG	1 cut(s)	299
FriOI	GRGCYC	1 cut(s)	490
Fsp4HI	GCNGC	4 cut(s)	6, 116, 422, 555
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	4 cut(s)	6, 116, 422, 555
HaeIII	GGCC	3 cut(s)	5, 464, 620
HapII	CCGG	2 cut(s)	174, 483
HgaI	GACGC	3 cut(s)	82, 121, 365
Hin1I	GRCGYC	2 cut(s)	93, 132
Hin1II	CATG	2 cut(s)	247, 280
HincII	GTYRAC	2 cut(s)	355, 367
HindII	GTYRAC	2 cut(s)	355, 367
HinfI	GANTC	2 cut(s)	17, 494
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	174, 483
HphI	GGTGA	3 cut(s)	94, 199, 223
Hpy166II	GTNNAC	2 cut(s)	355, 367
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	5 cut(s)	199, 244, 491, 505, 514
Hpy8I	GTNNAC	2 cut(s)	355, 367
Hpy99I	CGWCG	6 cut(s)	14, 17, 62, 98, 356, 359
HpyAV	CCTTC	4 cut(s)	94, 196, 249, 586
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	3 cut(s)	60, 155, 451
HpyCH4V	TGCA	4 cut(s)	118, 250, 389, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 149
HpyF3I	CTNAG	1 cut(s)	446
HpySE526I	ACGT	3 cut(s)	60, 155, 451
Hsp92I	GRCGYC	2 cut(s)	93, 132
Hsp92II	CATG	2 cut(s)	247, 280
Ksp22I	TGATCA	1 cut(s)	546
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	4 cut(s)	39, 288, 309, 546
LguI	GCTCTTC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	102, 541
LweI	GCATC	2 cut(s)	237, 376
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	3 cut(s)	60, 155, 451
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	4 cut(s)	41, 290, 311, 548
MboI	GATC	4 cut(s)	39, 288, 309, 546
MboII	GAAGA	4 cut(s)	61, 280, 395, 601
MhlI	GDGCHC	2 cut(s)	165, 490
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	8 cut(s)	82, 91, 119, 171, 219, 411, 455, 577
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	5 cut(s)	63, 333, 366, 585, 628
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	2 cut(s)	174, 483
MspR9I	CCNGG	3 cut(s)	175, 344, 484
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	29, 149
NciI	CCSGG	2 cut(s)	175, 484
NdeII	GATC	4 cut(s)	39, 288, 309, 546
NlaIII	CATG	2 cut(s)	247, 280
NlaIV	GGNNCC	1 cut(s)	565
NmuCI	GTSAC	1 cut(s)	100
OliI	CACNNNNGTG	1 cut(s)	158
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 102
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	7, 117, 423, 556
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	564
Psp6I	CCWGG	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	565
PspPI	GGNCC	3 cut(s)	81, 374, 564
PspPPI	RGGWCCY	1 cut(s)	564
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	5 cut(s)	63, 333, 366, 585, 628
SatI	GCNGC	4 cut(s)	6, 116, 422, 555
Sau3AI	GATC	4 cut(s)	39, 288, 309, 546
Sau96I	GGNCC	3 cut(s)	81, 374, 564
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	3 cut(s)	175, 344, 484
SduI	GDGCHC	2 cut(s)	165, 490
SfaNI	GCATC	2 cut(s)	237, 376
SgrDI	CGTCGACG	1 cut(s)	353
SinI	GGWCC	3 cut(s)	81, 374, 564
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	5 cut(s)	6, 76, 171, 193, 421
SspMI	CTAG	1 cut(s)	378
StyD4I	CCNGG	3 cut(s)	173, 342, 482
StyI	CCWWGG	2 cut(s)	377, 615
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	3 cut(s)	63, 158, 454
TaqI	TCGA	4 cut(s)	15, 87, 96, 354
TasI	AATT	1 cut(s)	396
TauI	GCSGC	2 cut(s)	8, 424
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	5 cut(s)	63, 333, 366, 585, 628
Tru9I	TTAA	5 cut(s)	63, 333, 366, 585, 628
TscAI	CASTG	2 cut(s)	331, 376
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	2 cut(s)	115, 554
Tsp45I	GTSAC	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	2 cut(s)	331, 376
VpaK11BI	GGWCC	3 cut(s)	81, 374, 564
XmaJI	CCTAGG	1 cut(s)	377
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.