Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

654098 .. 654535

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g00940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAAGATTTAAATGACGCCTCAATGACTGATTCGTATGTCTTCTTTGTGCCAATCAGTGGTCCACGTGAAGATGCAACTCGTATTGGATCTGCTGGAGTTGTTAGGCGTCAGGCTGTGGATATTTCACCTTTGAGGCGCGTGAATCAGGCTATCTATCTCCTCACCACCGGTGCTCGTGAGTCTGCTTTTAGGAACGTCAAAACTATTGCTGAGTGTTTGGCTGACGAACTTATTAATGCTGCCAAAGGTTCATCTAACAGTTATGCAATCAAGAAGAAGGATGAGATCGAAAGAGTTGCCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

104

Amino Acids

11.33

Weight (kDa)

7.86

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	20 - 102	2.5e-20	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	1 cut(s)	141
AclWI	GGATC	1 cut(s)	97
AcvI	CACGTG	1 cut(s)	68
AcyI	GRCGYC	2 cut(s)	18, 109
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgeI	ACCGGT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	242
AseI	ATTAAT	1 cut(s)	237
AsiGI	ACCGGT	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	120, 157
AvaII	GGWCC	1 cut(s)	62
BauI	CACGAG	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	229
BcgI	CGANNNNNNTGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	68
BsaHI	GRCGYC	2 cut(s)	18, 109
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	170
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	141
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	89, 288
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	141
BspPI	GGATC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	170
BssAI	RCCGGY	1 cut(s)	170
BssMI	GATC	2 cut(s)	89, 288
BssNI	GRCGYC	2 cut(s)	18, 109
BssSI	CACGAG	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	263, 308
BstACI	GRCGYC	2 cut(s)	18, 109
BstBAI	YACGTR	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	289
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	92, 291
BstMBI	GATC	2 cut(s)	89, 288
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	229
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	62
CseI	GACGC	2 cut(s)	26, 98
CspAI	ACCGGT	1 cut(s)	170
CviJI	RGCY	3 cut(s)	116, 152, 224
CviKI_1	RGCY	3 cut(s)	116, 152, 224
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	2 cut(s)	91, 290
DpnII	GATC	2 cut(s)	89, 288
DraI	TTTAAA	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	62
Eco72I	CACGTG	1 cut(s)	68
FaiI	YATR	2 cut(s)	39, 267
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	243
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	117
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	2 cut(s)	26, 98
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	2 cut(s)	18, 109
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	3 cut(s)	32, 145, 182
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	120, 157
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188III	TCNNGA	2 cut(s)	179, 274
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	2 cut(s)	263, 308
HpyCH4IV	ACGT	2 cut(s)	67, 198
HpyCH4V	TGCA	2 cut(s)	77, 269
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	2 cut(s)	67, 198
Hsp92I	GRCGYC	2 cut(s)	18, 109
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	2 cut(s)	89, 288
LpnPI	CCDG	4 cut(s)	81, 98, 134, 184
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	64
MaeII	ACGT	2 cut(s)	67, 198
MalI	GATC	2 cut(s)	91, 290
MboI	GATC	2 cut(s)	89, 288
MboII	GAAGA	4 cut(s)	17, 34, 83, 289
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	191
MnlI	CCTC	3 cut(s)	31, 129, 173
MseI	TTAA	3 cut(s)	11, 237, 310
MspI	CCGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	141
NdeII	GATC	2 cut(s)	89, 288
PfeI	GAWTC	2 cut(s)	32, 145
PflMI	CCANNNNNTGG	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	190
PmaCI	CACGTG	1 cut(s)	68
PmlI	CACGTG	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	190
Ppu21I	YACGTR	1 cut(s)	68
PshBI	ATTAAT	1 cut(s)	237
PspCI	CACGTG	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	11, 237, 310
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	89, 288
Sau96I	GGNCC	1 cut(s)	62
SchI	GAGTC	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	4 cut(s)	70, 133, 201, 253
SfaNI	GCATC	1 cut(s)	64
SgrAI	CRCCGGYG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	62
SmiI	ATTTAAAT	1 cut(s)	12
SwaI	ATTTAAAT	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	263, 308
TaiI	ACGT	2 cut(s)	70, 201
TaqI	TCGA	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	32, 145
Tru1I	TTAA	3 cut(s)	11, 237, 310
Tru9I	TTAA	3 cut(s)	11, 237, 310
TscAI	CASTG	1 cut(s)	64
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	62
VspI	ATTAAT	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.