Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Forward (+)

9138145 .. 9139594

Gene Structure 1450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACTTCTAAGTTGTGCTCTCCTCTTACCAATTTGATAACTCAGTCTATTGGTATAGATCCTGGAAGTACTTCTGATAAGCATGCTGCTTTGCCAGATCTCGACAATTCAACATCTTTCTTTGGTGTCTACGATGGTCATGGAGTGCTCAACCAGGAAACATCCTGTTTGTTGAATAAATTGAAATCTATCATTCAAGTTATTGTTGATGCTGTTGTTAACAGTGGTCCACGTGAAGATGCCACTCGTATTGGATCCACTGGAGTTGTTAGGCGTCAGGCTGTGGATATCTCACCTCTGAGACGTGTGAATCAGGCTATCTATCTCCTGACAACTGGTGCTCGTGAGTCTGCTTTCAGGAACATCAAAACTATTGTTGAATGCTTGGCTGATGAGCTTATCAATGCTGCCAAAGGTTCCTCCAACAGTTATGCTATCAAGAAGAAGGATGAGATTGAAAGGGTTGCCAAAGCCAATTGTGAAGGTGCTTCTGGTACTGAGGACTACAATTTCAAATCAAAGTGGCAACCTGATAAGAAGAGGAAAAAGAAAGGGGTACCTGTTGAGATTATTGACCAGAAGGCAGTTGCACTTGATGCACCAAGCCAATTAAAGATGTTGTGCATGTGGGGTGCAGATGAGCTGGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

218

Amino Acids

23.58

Weight (kDa)

8.53

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	63 - 159	2.6e-24	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	129
AclWI	GGATC	3 cut(s)	53, 249, 262
AcvI	CACGTG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	274
AfaI	GTAC	3 cut(s)	70, 496, 558
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	7 cut(s)	111, 175, 184, 197, 380, 458, 514
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	2 cut(s)	61, 153
AluBI	AGCT	2 cut(s)	397, 643
AluI	AGCT	2 cut(s)	397, 643
Alw21I	GWGCWC	3 cut(s)	20, 150, 343
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	3 cut(s)	53, 249, 262
ApeKI	GCWGC	2 cut(s)	86, 407
Asp700I	GAANNNNTTC	1 cut(s)	70
Asp718I	GGTACC	1 cut(s)	556
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	285
AvaII	GGWCC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	556
BauI	CACGAG	1 cut(s)	342
BbrPI	CACGTG	1 cut(s)	233
Bbv12I	GWGCWC	3 cut(s)	20, 150, 343
BbvI	GCAGC	2 cut(s)	73, 394
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	2 cut(s)	63, 155
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	652
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	87, 408
BlsI	GCNGC	2 cut(s)	88, 409
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	63, 155
Bme18I	GGWCC	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	3 cut(s)	256, 418, 558
BmrFI	CCNGG	2 cut(s)	63, 155
BmsI	GCATC	3 cut(s)	199, 229, 586
BpmI	CTGGAG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	265, 340
BseBI	CCWGG	2 cut(s)	63, 155
BseGI	GGATG	2 cut(s)	161, 454
BseMII	CTCAG	3 cut(s)	56, 290, 489
BseNI	ACTGG	2 cut(s)	265, 340
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	73, 394
BsgI	GTGCAG	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	3 cut(s)	20, 150, 343
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	386
Bsp1286I	GDGCHC	3 cut(s)	20, 150, 343
Bsp143I	GATC	3 cut(s)	58, 97, 254
BspCNI	CTCAG	3 cut(s)	55, 291, 490
BspLI	GGNNCC	3 cut(s)	256, 418, 558
BspPI	GGATC	3 cut(s)	53, 249, 262
BspT107I	GGYRCC	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	265, 340
BssMI	GATC	3 cut(s)	58, 97, 254
BssNI	GRCGYC	1 cut(s)	274
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	2 cut(s)	63, 155
Bst4CI	ACNGT	2 cut(s)	224, 428
Bst6I	CTCTTC	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	274
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	9, 42, 299, 498
BstF5I	GGATG	2 cut(s)	161, 454
BstKTI	GATC	3 cut(s)	61, 100, 257
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	3 cut(s)	58, 97, 254
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstNI	CCWGG	2 cut(s)	63, 155
BstNSI	RCATGY	2 cut(s)	86, 628
BstSCI	CCNGG	2 cut(s)	61, 153
BstV1I	GCAGC	2 cut(s)	73, 394
BstX2I	RGATCY	3 cut(s)	58, 97, 254
BstYI	RGATCY	3 cut(s)	58, 97, 254
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	161, 454
BtsIMutI	CAGTG	2 cut(s)	229, 258
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	69, 495, 557
CspCI	CAANNNNNGTGG	4 cut(s)	232, 247, 267, 282
CviAII	CATG	3 cut(s)	83, 140, 625
CviJI	RGCY	7 cut(s)	281, 317, 389, 397, 473, 606, 643
CviKI_1	RGCY	7 cut(s)	281, 317, 389, 397, 473, 606, 643
CviQI	GTAC	3 cut(s)	69, 495, 557
DdeI	CTNAG	4 cut(s)	9, 42, 299, 498
DpnI	GATC	3 cut(s)	60, 99, 256
DpnII	GATC	3 cut(s)	58, 97, 254
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	1 cut(s)	227
Eco72I	CACGTG	1 cut(s)	233
EcoRII	CCWGG	2 cut(s)	61, 153
EcoRV	GATATC	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	3 cut(s)	86, 143, 628
FaiI	YATR	5 cut(s)	56, 84, 141, 432, 626
FatI	CATG	3 cut(s)	82, 139, 624
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	87, 408
FokI	GGATG	2 cut(s)	148, 461
Fsp4HI	GCNGC	2 cut(s)	87, 408
FspBI	CTAG	1 cut(s)	652
GluI	GCNGC	2 cut(s)	87, 408
GsuI	CTGGAG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	86, 143, 628
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	2 cut(s)	310, 347
HpaI	GTTAAC	1 cut(s)	220
HphI	GGTGA	1 cut(s)	285
Hpy166II	GTNNAC	4 cut(s)	130, 220, 230, 649
Hpy188I	TCNGA	2 cut(s)	76, 300
Hpy188III	TCNNGA	5 cut(s)	101, 328, 344, 358, 439
Hpy8I	GTNNAC	4 cut(s)	130, 220, 230, 649
HpyAV	CCTTC	3 cut(s)	439, 476, 574
HpyCH4III	ACNGT	2 cut(s)	224, 428
HpyCH4IV	ACGT	2 cut(s)	232, 304
HpyCH4V	TGCA	4 cut(s)	590, 599, 624, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpyF3I	CTNAG	4 cut(s)	9, 42, 299, 498
HpySE526I	ACGT	2 cut(s)	232, 304
Hsp92I	GRCGYC	1 cut(s)	274
Hsp92II	CATG	3 cut(s)	86, 143, 628
KpnI	GGTACC	1 cut(s)	560
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	58, 97, 254
Lsp1109I	GCAGC	2 cut(s)	73, 394
LweI	GCATC	3 cut(s)	199, 229, 586
MaeI	CTAG	1 cut(s)	652
MaeII	ACGT	2 cut(s)	232, 304
MalI	GATC	3 cut(s)	60, 99, 256
MboI	GATC	3 cut(s)	58, 97, 254
MboII	GAAGA	3 cut(s)	248, 454, 550
MfeI	CAATTG	1 cut(s)	475
MflI	RGATCY	3 cut(s)	58, 97, 254
MhlI	GDGCHC	3 cut(s)	20, 150, 343
MluCI	AATT	6 cut(s)	31, 106, 179, 475, 508, 608
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	5 cut(s)	33, 306, 430, 493, 534
MroXI	GAANNNNTTC	1 cut(s)	70
MseI	TTAA	2 cut(s)	219, 611
MspR9I	CCNGG	2 cut(s)	63, 155
MunI	CAATTG	1 cut(s)	475
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	2 cut(s)	63, 155
MwoI	GCNNNNNNNGC	1 cut(s)	596
NdeII	GATC	3 cut(s)	58, 97, 254
NlaIII	CATG	3 cut(s)	86, 143, 628
NlaIV	GGNNCC	3 cut(s)	256, 418, 558
NspI	RCATGY	2 cut(s)	86, 628
PaeI	GCATGC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	310
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	88, 409
PleI	GAGTC	1 cut(s)	355
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	355
Ppu21I	YACGTR	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	61, 153
PspCI	CACGTG	1 cut(s)	233
PspGI	CCWGG	2 cut(s)	61, 153
PspN4I	GGNNCC	3 cut(s)	256, 418, 558
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	3 cut(s)	58, 97, 254
RsaI	GTAC	3 cut(s)	70, 496, 558
RsaNI	GTAC	3 cut(s)	69, 495, 557
SaqAI	TTAA	2 cut(s)	219, 611
SatI	GCNGC	2 cut(s)	87, 408
Sau3AI	GATC	3 cut(s)	58, 97, 254
Sau96I	GGNCC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	63, 155
SduI	GDGCHC	3 cut(s)	20, 150, 343
SetI	ASST	9 cut(s)	235, 298, 307, 399, 418, 487, 532, 562, 645
SfaNI	GCATC	3 cut(s)	199, 229, 586
SinI	GGWCC	1 cut(s)	227
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	6 cut(s)	31, 106, 179, 475, 508, 608
SspMI	CTAG	1 cut(s)	652
StyD4I	CCNGG	2 cut(s)	61, 153
TaaI	ACNGT	2 cut(s)	224, 428
TaiI	ACGT	2 cut(s)	235, 307
TaqI	TCGA	1 cut(s)	102
TasI	AATT	6 cut(s)	31, 106, 179, 475, 508, 608
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	2 cut(s)	219, 611
Tru9I	TTAA	2 cut(s)	219, 611
TscAI	CASTG	2 cut(s)	229, 265
TseI	GCWGC	2 cut(s)	86, 407
TspRI	CASTG	2 cut(s)	229, 265
VpaK11BI	GGWCC	1 cut(s)	227
XceI	RCATGY	2 cut(s)	86, 628
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	70
XspI	CTAG	1 cut(s)	652
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.