Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

3749831 .. 3752305

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1033100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTGCCGCTGCCGTAGCTGCTCCTGCTGTGGTCGAACCAACGCAGCCTCACTATGACGTGAAGCTGTTCAACCGCTGGAGCTTCGATGATGTTCAGGTCAGTGACATTTCACTGGCGGACTATGTTGGAGTGGTACCTGCCAGGCATGCAACTTACGTACCTCACACTGCTGGGAGATACTCAGTGAAGCGATTCAGGAAAGCTCAGTGCCCTATCGTGGAGAGGCTTACAAACTCACTCATGATGCACGGAAGAAACAATGGAAAGAAACTCATGGCTGTCAGGATTATTAGGCATGCAATGGAAATTATCCATTTGCTGACTGATCTGAACCCAGTCCAAGTTATTGTTGATGCTGTTGTTAACAGTGGTCCACGTGAAGATGCAACCCGTATTGGATCTGCTGGAGTTGTTAGGCGTCAAGCTGTGGATATCTCACCTTTGAGACGTGTGAATCAGGCTATCTATCTCCTCACAACTGGTGCTCGTGAGTCTGCTTTCAGAAACGTCAAAACTATTGCGGAATGTTTGGCTGATGAACTTATCAACGCTGCCAAAGGTTCCTCTAACAGTTATGCAATCAAGAAGAAGGATGAGATCGAAAGAGTTGCAAAGGCCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

210

Amino Acids

23.05

Weight (kDa)

9.86

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	51 - 209	3.9e-41	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	148
Acc65I	GGTACC	1 cut(s)	136
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	4 cut(s)	9, 76, 119, 524
AclWI	GGATC	1 cut(s)	409
AcvI	CACGTG	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	421
AfaI	GTAC	2 cut(s)	138, 162
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	73
AjiI	CACGTC	2 cut(s)	61, 452
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	5 cut(s)	20, 67, 84, 206, 428
AluI	AGCT	5 cut(s)	20, 67, 84, 206, 428
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	5 cut(s)	5, 11, 20, 46, 554
Asp700I	GAANNNNTTC	2 cut(s)	68, 194
Asp718I	GGTACC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	215
BaeI	ACNNNNGTAYC	2 cut(s)	144, 177
BanI	GGYRCC	1 cut(s)	136
BauI	CACGAG	1 cut(s)	489
BbrPI	CACGTG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	3 cut(s)	7, 58, 541
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BciT130I	CCWGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	148
BisI	GCNGC	6 cut(s)	6, 9, 12, 21, 47, 555
BlsI	GCNGC	6 cut(s)	7, 10, 13, 22, 48, 556
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	374
BmgBI	CACGTC	2 cut(s)	61, 452
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	138, 565
BmrFI	CCNGG	1 cut(s)	145
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	237, 346, 376
BmuI	ACTGGG	1 cut(s)	332
BpmI	CTGGAG	2 cut(s)	100, 429
BsaAI	YACGTR	2 cut(s)	160, 380
BsaHI	GRCGYC	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	3 cut(s)	120, 338, 487
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	198, 221
BseNI	ACTGG	3 cut(s)	120, 338, 487
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	7, 58, 541
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	442
BsmBI	CGTCTC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	215, 490
Bsp143I	GATC	3 cut(s)	328, 401, 600
BspACI	CCGC	4 cut(s)	9, 76, 119, 524
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	2 cut(s)	197, 220
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	138, 565
BspMI	ACCTGC	1 cut(s)	148
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	120, 338, 487
BssMI	GATC	3 cut(s)	328, 401, 600
BssNI	GRCGYC	1 cut(s)	421
BssSI	CACGAG	1 cut(s)	489
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	3 cut(s)	371, 575, 626
BstACI	GRCGYC	1 cut(s)	421
BstBAI	YACGTR	2 cut(s)	160, 380
BstC8I	GCNNGC	2 cut(s)	150, 300
BstDEI	CTNAG	2 cut(s)	184, 207
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	3 cut(s)	331, 404, 603
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	3 cut(s)	328, 401, 600
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 17, 20, 26, 149
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	2 cut(s)	152, 302
BstSCI	CCNGG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	215
BstSNI	TACGTA	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	7, 58, 541
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	620
BtrI	CACGTC	2 cut(s)	61, 452
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	6 cut(s)	109, 113, 168, 192, 215, 376
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	150, 300
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	2 cut(s)	137, 161
CviAII	CATG	4 cut(s)	149, 244, 277, 299
CviQI	GTAC	2 cut(s)	137, 161
DdeI	CTNAG	2 cut(s)	184, 207
DpnI	GATC	3 cut(s)	330, 403, 602
DpnII	GATC	3 cut(s)	328, 401, 600
EciI	GGCGGA	1 cut(s)	134
Eco105I	TACGTA	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	374
Eco72I	CACGTG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	143
EcoRV	GATATC	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	4 cut(s)	152, 247, 280, 302
FaiI	YATR	7 cut(s)	57, 126, 150, 245, 278, 300, 579
FatI	CATG	4 cut(s)	148, 243, 276, 298
Fnu4HI	GCNGC	6 cut(s)	6, 9, 12, 21, 47, 555
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	6 cut(s)	6, 9, 12, 21, 47, 555
GluI	GCNGC	6 cut(s)	6, 9, 12, 21, 47, 555
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	2 cut(s)	100, 429
HaeIII	GGCC	1 cut(s)	620
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	4 cut(s)	152, 247, 280, 302
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	3 cut(s)	195, 457, 494
HpaI	GTTAAC	1 cut(s)	367
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	2 cut(s)	367, 377
Hpy188I	TCNGA	2 cut(s)	333, 506
Hpy188III	TCNNGA	5 cut(s)	199, 244, 286, 491, 586
Hpy8I	GTNNAC	2 cut(s)	367, 377
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	3 cut(s)	371, 575, 626
HpyCH4IV	ACGT	5 cut(s)	60, 159, 379, 451, 510
HpyCH4V	TGCA	6 cut(s)	152, 250, 302, 389, 581, 614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 17, 20, 26, 149
HpyF3I	CTNAG	2 cut(s)	184, 207
HpySE526I	ACGT	5 cut(s)	60, 159, 379, 451, 510
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	4 cut(s)	152, 247, 280, 302
KpnI	GGTACC	1 cut(s)	140
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	328, 401, 600
LmnI	GCTCC	2 cut(s)	28, 81
Lsp1109I	GCAGC	3 cut(s)	7, 58, 541
LweI	GCATC	3 cut(s)	237, 346, 376
MaeII	ACGT	5 cut(s)	60, 159, 379, 451, 510
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	3 cut(s)	330, 403, 602
MboI	GATC	3 cut(s)	328, 401, 600
MboII	GAAGA	3 cut(s)	267, 395, 601
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	215, 490
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	5 cut(s)	60, 174, 219, 485, 577
MroXI	GAANNNNTTC	2 cut(s)	68, 194
MseI	TTAA	2 cut(s)	366, 628
MspA1I	CMGCKG	2 cut(s)	11, 78
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	5 cut(s)	11, 17, 20, 26, 149
NdeII	GATC	3 cut(s)	328, 401, 600
NlaIII	CATG	4 cut(s)	152, 247, 280, 302
NlaIV	GGNNCC	2 cut(s)	138, 565
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	2 cut(s)	152, 302
PaeI	GCATGC	2 cut(s)	152, 302
PagI	TCATGA	1 cut(s)	243
PdmI	GAANNNNTTC	2 cut(s)	68, 194
PfeI	GAWTC	2 cut(s)	195, 457
PkrI	GCNGC	6 cut(s)	7, 10, 13, 22, 48, 556
PleI	GAGTC	1 cut(s)	502
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	502
Ppu21I	YACGTR	2 cut(s)	160, 380
Psp6I	CCWGG	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	2 cut(s)	138, 565
PspPI	GGNCC	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	401
RsaI	GTAC	2 cut(s)	138, 162
RsaNI	GTAC	2 cut(s)	137, 161
SaqAI	TTAA	2 cut(s)	366, 628
SatI	GCNGC	6 cut(s)	6, 9, 12, 21, 47, 555
Sau3AI	GATC	3 cut(s)	328, 401, 600
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	2 cut(s)	215, 490
SfaNI	GCATC	3 cut(s)	237, 346, 376
SinI	GGWCC	1 cut(s)	374
SnaBI	TACGTA	1 cut(s)	160
SphI	GCATGC	2 cut(s)	152, 302
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	4 cut(s)	9, 76, 119, 524
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	3 cut(s)	371, 575, 626
TaiI	ACGT	5 cut(s)	63, 162, 382, 454, 513
TaqI	TCGA	3 cut(s)	36, 87, 603
TasI	AATT	1 cut(s)	309
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	195, 457
Tru1I	TTAA	2 cut(s)	366, 628
Tru9I	TTAA	2 cut(s)	366, 628
TscAI	CASTG	6 cut(s)	109, 120, 175, 192, 215, 376
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	5 cut(s)	5, 11, 20, 46, 554
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	6 cut(s)	109, 120, 175, 192, 215, 376
VpaK11BI	GGWCC	1 cut(s)	374
XceI	RCATGY	2 cut(s)	152, 302
XmnI	GAANNNNTTC	2 cut(s)	68, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.