Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Forward (+)

5641492 .. 5644316

Gene Structure 2825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1049600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTGCTGCTGATGTACCTCTTCCTGTAGCCGAACCAACGCAGCCTCACTATGACGTGAAGCTGTTCAACAAGTGGAGCTTTGATGATGTCCAGGTCAGTGACATTTCACTGGCGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACTTATGTACCTCACACTGCTGGGAGATACTCAGTCAAACGATTCAGGAAAGCTCAGTGCCCTATTGTGGAGAGGCTTACAAACTCTCTCATGATGCACGGGAGAAACAATGGAAAGAAACTCATGGCTGTCAGGATTGTTAGGCACGCGATGGAAATTATCCATTTGCTAACTGATCTGAACCCAATCCAAGTTATTGTTGATGCTGTCGTTAACAGTGGTCCACGTGAAGATGCAACTCGTATTGGATCTGCTGGAGTGGTTAGGCGTCAGGCTGTGGATATCTCACCTCTGAGACGTGTGAATCAGGCTATCTATCTCCTCACAACTGGTGCTCGTGAGTCTGCTTTCAGGAACGTTAAAACTATTGCTGAATGTTTGGCTGATGAACTTATTAATGCTGCCAAAGGTTCCTCTAACAGTTATGCAATCAAGAAGAAGGATGAGATCGAAAGAGTTGCCAAGGCCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

209

Amino Acids

23.01

Weight (kDa)

9.69

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	48 - 208	1.4e-41	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AciI	CCGC	1 cut(s)	116
AclI	AACGTT	1 cut(s)	507
AclWI	GGATC	1 cut(s)	406
AcvI	CACGTG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	418
AfaI	GTAC	2 cut(s)	18, 159
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	70
AjiI	CACGTC	2 cut(s)	58, 449
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	3 cut(s)	64, 81, 203
AluI	AGCT	3 cut(s)	64, 81, 203
Alw21I	GWGCWC	1 cut(s)	487
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	4 cut(s)	5, 8, 43, 551
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
BauI	CACGAG	1 cut(s)	486
BbrPI	CACGTG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	55, 538
BccI	CCATC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	439
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	4 cut(s)	6, 9, 44, 552
BlsI	GCNGC	4 cut(s)	7, 10, 45, 553
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	371
BmgBI	CACGTC	2 cut(s)	58, 449
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	3 cut(s)	234, 343, 373
BpmI	CTGGAG	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	418
BsaJI	CCNNGG	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	2 cut(s)	117, 484
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	3 cut(s)	195, 218, 434
BseNI	ACTGG	2 cut(s)	117, 484
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	55, 538
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	439
BsmBI	CGTCTC	1 cut(s)	439
BsnI	GGCC	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	212, 487
Bsp143I	GATC	3 cut(s)	325, 398, 597
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	3 cut(s)	194, 217, 435
BspFNI	CGCG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	406
BsrI	ACTGG	2 cut(s)	117, 484
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	3 cut(s)	325, 398, 597
BssNI	GRCGYC	1 cut(s)	418
BssSI	CACGAG	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	612
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	368, 572, 623
Bst6I	CTCTTC	1 cut(s)	27
BstACI	GRCGYC	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	147, 297
BstDEI	CTNAG	3 cut(s)	181, 204, 443
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	299
BstKTI	GATC	3 cut(s)	328, 401, 600
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	3 cut(s)	325, 398, 597
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	27
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	55, 538
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	617
BtgZI	GCGATG	1 cut(s)	314
BtrI	CACGTC	2 cut(s)	58, 449
BtsCI	GGATG	1 cut(s)	598
BtsI	GCAGTG	1 cut(s)	165
BtsIMutI	CAGTG	5 cut(s)	106, 110, 165, 212, 373
Cac8I	GCNNGC	2 cut(s)	147, 297
CciI	TCATGA	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	17, 158
CviAII	CATG	3 cut(s)	146, 241, 274
CviQI	GTAC	2 cut(s)	17, 158
DdeI	CTNAG	3 cut(s)	181, 204, 443
DpnI	GATC	3 cut(s)	327, 400, 599
DpnII	GATC	3 cut(s)	325, 398, 597
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	371
Eco72I	CACGTG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	3 cut(s)	149, 244, 277
FaiI	YATR	6 cut(s)	54, 147, 156, 242, 275, 576
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	3 cut(s)	145, 240, 273
Fnu4HI	GCNGC	4 cut(s)	6, 9, 44, 552
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	4 cut(s)	6, 9, 44, 552
GluI	GCNGC	4 cut(s)	6, 9, 44, 552
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	617
HgaI	GACGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	149, 244, 277
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	3 cut(s)	192, 454, 491
HpaI	GTTAAC	1 cut(s)	364
HphI	GGTGA	1 cut(s)	429
Hpy166II	GTNNAC	2 cut(s)	364, 374
Hpy188I	TCNGA	2 cut(s)	330, 444
Hpy188III	TCNNGA	6 cut(s)	196, 241, 283, 488, 502, 583
Hpy8I	GTNNAC	2 cut(s)	364, 374
HpyAV	CCTTC	2 cut(s)	147, 583
HpyCH4III	ACNGT	3 cut(s)	368, 572, 623
HpyCH4IV	ACGT	4 cut(s)	57, 376, 448, 507
HpyCH4V	TGCA	5 cut(s)	134, 149, 247, 386, 578
HpyF3I	CTNAG	3 cut(s)	181, 204, 443
HpySE526I	ACGT	4 cut(s)	57, 376, 448, 507
Hsp92I	GRCGYC	1 cut(s)	418
Hsp92II	CATG	3 cut(s)	149, 244, 277
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	325, 398, 597
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	2 cut(s)	55, 538
LweI	GCATC	3 cut(s)	234, 343, 373
MaeII	ACGT	4 cut(s)	57, 376, 448, 507
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	327, 400, 599
MboI	GATC	3 cut(s)	325, 398, 597
MboII	GAAGA	3 cut(s)	14, 392, 598
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	212, 487
MluCI	AATT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	500
MnlI	CCTC	7 cut(s)	30, 57, 171, 216, 450, 482, 574
MroXI	GAANNNNTTC	1 cut(s)	65
MseI	TTAA	4 cut(s)	363, 510, 546, 625
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	299
NdeII	GATC	3 cut(s)	325, 398, 597
NlaIII	CATG	3 cut(s)	149, 244, 277
NlaIV	GGNNCC	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	149
PagI	TCATGA	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	192, 454
PkrI	GCNGC	4 cut(s)	7, 10, 45, 553
PleI	GAGTC	1 cut(s)	499
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	499
Ppu21I	YACGTR	1 cut(s)	377
PshBI	ATTAAT	1 cut(s)	546
Psp1406I	AACGTT	1 cut(s)	507
Psp6I	CCWGG	1 cut(s)	93
PspCI	CACGTG	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	2 cut(s)	18, 159
RsaNI	GTAC	2 cut(s)	17, 158
SaqAI	TTAA	4 cut(s)	363, 510, 546, 625
SatI	GCNGC	4 cut(s)	6, 9, 44, 552
Sau3AI	GATC	3 cut(s)	325, 398, 597
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	1 cut(s)	500
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	212, 487
SfaNI	GCATC	3 cut(s)	234, 343, 373
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	371
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	3 cut(s)	368, 572, 623
TaiI	ACGT	4 cut(s)	60, 379, 451, 510
TaqI	TCGA	1 cut(s)	600
TasI	AATT	1 cut(s)	306
TfiI	GAWTC	2 cut(s)	192, 454
Tru1I	TTAA	4 cut(s)	363, 510, 546, 625
Tru9I	TTAA	4 cut(s)	363, 510, 546, 625
TscAI	CASTG	5 cut(s)	106, 117, 172, 212, 373
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	5, 8, 43, 551
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	552
TspRI	CASTG	5 cut(s)	106, 117, 172, 212, 373
VpaK11BI	GGWCC	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	546
XceI	RCATGY	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.