Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

60059049 .. 60060469

Gene Structure 1421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG371100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAAATGCCGAATCTGTTTTCAGGTGAGCGACATCTCCCTGCAAGATTACGTCGGCGTCGCTCAGGCGAAGCACGCCACCTATGTGCCTCACACTGCTGGCAGGTACTCGGTGAAGCGGTTCAGGAAGGCTCAGTGCCCAATCGTCGAGAGGCTCACCAACTCTCTCATGATGCACGGAAGAAACAACGGCAAGAAGCTGATGGCTGTTCGCATTGTCAGGCACGCTATGGAGATCATCCATTTGCTCACTGACCTCAACCCTATTCAGGTCATCGTCGACGCAGTTGTTAACAGTGGTCCTAGGGAAGATGCAACCCGAATTGGGTCTGCTGGGGTTGTGAGGCGTCAGGCTGTTGATATTTCTCCGCTCAGACGTGTCAATCAGGCCATTTATCTGCTGACTACCGGGGCTCGTGAGTCCGCTTTCAGAAATATCAAGACGATTGCAGAGTGCTTGGCTGATGAGCTGATCAATGCAGCTAAGGGGTCCTCTAACAGCTATGCTATTAAGAAGAAGGACGAGATTGAGAGAGTCGCCAAGGCCAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

184

Amino Acids

20.48

Weight (kDa)

10.06

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	23 - 184	9.3e-42	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	93
AccBSI	CCGCTC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	3 cut(s)	118, 368, 423
AcyI	GRCGYC	2 cut(s)	57, 346
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	268, 324
AflIII	ACRYGT	1 cut(s)	376
AjiI	CACGTC	1 cut(s)	377
AleI	CACNNNNGTG	1 cut(s)	83
AluBI	AGCT	4 cut(s)	199, 469, 482, 501
AluI	AGCT	4 cut(s)	199, 469, 482, 501
AoxI	GGCC	2 cut(s)	387, 543
ApeKI	GCWGC	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	119
AspA2I	CCTAGG	1 cut(s)	302
AspS9I	GGNCC	2 cut(s)	299, 489
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	3 cut(s)	37, 124, 148
AvaII	GGWCC	2 cut(s)	299, 489
AvrII	CCTAGG	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	415
BauI	CACGAG	1 cut(s)	414
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	1 cut(s)	205
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	1 cut(s)	409
BfaI	CTAG	1 cut(s)	303
BfuAI	ACCTGC	1 cut(s)	93
BisI	GCNGC	1 cut(s)	480
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	409
Bme18I	GGWCC	2 cut(s)	299, 489
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	299, 489
BmiI	GGNNCC	1 cut(s)	490
BmrFI	CCNGG	1 cut(s)	409
BmsI	GCATC	2 cut(s)	162, 301
Bpu10I	CCTNAGC	2 cut(s)	63, 483
BpuMI	CCSGG	1 cut(s)	409
BsaHI	GRCGYC	2 cut(s)	57, 346
BsaJI	CCNNGG	3 cut(s)	302, 408, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 324
BseDI	CCNNGG	3 cut(s)	302, 408, 540
BseGI	GGATG	1 cut(s)	237
BseLI	CCNNNNNNNGG	2 cut(s)	268, 324
BseMII	CTCAG	3 cut(s)	77, 146, 385
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	491
BseYI	CCCAGC	1 cut(s)	332
BshFI	GGCC	2 cut(s)	389, 545
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	268, 324
BsnI	GGCC	2 cut(s)	389, 545
Bsp1286I	GDGCHC	2 cut(s)	140, 415
Bsp143I	GATC	2 cut(s)	234, 471
BspACI	CCGC	3 cut(s)	118, 368, 423
BspANI	GGCC	2 cut(s)	389, 545
BspCNI	CTCAG	3 cut(s)	76, 145, 384
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	490
BspMI	ACCTGC	1 cut(s)	93
BsrBI	CCGCTC	1 cut(s)	370
BssECI	CCNNGG	3 cut(s)	302, 408, 540
BssMI	GATC	2 cut(s)	234, 471
BssNI	GRCGYC	2 cut(s)	57, 346
BssSI	CACGAG	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	302, 540
Bst2BI	CACGAG	1 cut(s)	414
Bst4CI	ACNGT	1 cut(s)	296
BstACI	GRCGYC	2 cut(s)	57, 346
BstC8I	GCNNGC	3 cut(s)	75, 100, 225
BstDEI	CTNAG	4 cut(s)	63, 132, 371, 483
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	237, 474
BstMBI	GATC	2 cut(s)	234, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	389, 545
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	237
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	4 cut(s)	93, 140, 249, 301
BveI	ACCTGC	1 cut(s)	93
Cac8I	GCNNGC	3 cut(s)	75, 100, 225
CciI	TCATGA	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	299, 489
CseI	GACGC	3 cut(s)	46, 290, 335
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	4 cut(s)	63, 132, 371, 483
DpnI	GATC	2 cut(s)	236, 473
DpnII	GATC	2 cut(s)	234, 471
Eco130I	CCWWGG	2 cut(s)	302, 540
Eco24I	GRGCYC	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	299, 489
EcoO109I	RGGNCCY	1 cut(s)	489
EcoT14I	CCWWGG	2 cut(s)	302, 540
EcoT38I	GRGCYC	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	302, 540
FaeI	CATG	1 cut(s)	172
FaiI	YATR	4 cut(s)	84, 170, 230, 504
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	471
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	1 cut(s)	480
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	389, 545
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	3 cut(s)	46, 290, 335
Hin1I	GRCGYC	2 cut(s)	57, 346
Hin1II	CATG	1 cut(s)	172
HincII	GTYRAC	2 cut(s)	280, 292
HindII	GTYRAC	2 cut(s)	280, 292
HinfI	GANTC	3 cut(s)	12, 419, 534
HpaI	GTTAAC	1 cut(s)	292
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	3 cut(s)	37, 124, 148
Hpy166II	GTNNAC	2 cut(s)	280, 292
Hpy188I	TCNGA	2 cut(s)	374, 431
Hpy188III	TCNNGA	5 cut(s)	124, 148, 169, 416, 439
Hpy8I	GTNNAC	2 cut(s)	280, 292
Hpy99I	CGWCG	5 cut(s)	56, 62, 149, 281, 284
HpyAV	CCTTC	2 cut(s)	121, 511
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	2 cut(s)	51, 376
HpyCH4V	TGCA	5 cut(s)	43, 175, 314, 449, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	4 cut(s)	63, 132, 371, 483
HpySE526I	ACGT	2 cut(s)	51, 376
Hsp92I	GRCGYC	2 cut(s)	57, 346
Hsp92II	CATG	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	471
KspAI	GTTAAC	1 cut(s)	292
Kzo9I	GATC	2 cut(s)	234, 471
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	162, 301
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	51, 376
MalI	GATC	2 cut(s)	236, 473
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	2 cut(s)	234, 471
MboII	GAAGA	3 cut(s)	192, 320, 526
MhlI	GDGCHC	2 cut(s)	140, 415
MluCI	AATT	1 cut(s)	321
MlyI	GAGTC	2 cut(s)	428, 543
MnlI	CCTC	5 cut(s)	99, 144, 266, 336, 502
MroXI	GAANNNNTTC	1 cut(s)	119
MseI	TTAA	3 cut(s)	291, 510, 553
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	1 cut(s)	409
NdeII	GATC	2 cut(s)	234, 471
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	490
OliI	CACNNNNGTG	1 cut(s)	83
PagI	TCATGA	1 cut(s)	168
PdmI	GAANNNNTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	2 cut(s)	427, 542
PpsI	GAGTC	2 cut(s)	427, 542
PpuMI	RGGWCCY	1 cut(s)	489
Psp5II	RGGWCCY	1 cut(s)	489
PspFI	CCCAGC	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	490
PspPI	GGNCC	2 cut(s)	299, 489
PspPPI	RGGWCCY	1 cut(s)	489
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	291, 510, 553
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	2 cut(s)	234, 471
Sau96I	GGNCC	2 cut(s)	299, 489
SchI	GAGTC	2 cut(s)	428, 543
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	140, 415
SfaNI	GCATC	2 cut(s)	162, 301
SgrDI	CGTCGACG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	299, 489
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	3 cut(s)	118, 368, 423
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	2 cut(s)	302, 540
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	2 cut(s)	54, 379
TaqI	TCGA	2 cut(s)	147, 279
TasI	AATT	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	3 cut(s)	291, 510, 553
Tru9I	TTAA	3 cut(s)	291, 510, 553
TscAI	CASTG	4 cut(s)	100, 140, 256, 301
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	4 cut(s)	100, 140, 256, 301
VpaK11BI	GGWCC	2 cut(s)	299, 489
XmaJI	CCTAGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	119
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.