Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

12443466 .. 12444164

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10002.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTTCCTTCGTGTTTTGGTTCTGTGACAATCAATGGTCCACGTGAAGATGCCACTCGTATTGGATCCACTGGAGTTGTTAGGCGTCAGGCTGTGGATATCTCACCTCTGAGACGTGTGAATCAGGCTATCTATCTCCTGACAACTGGTGCTCGTGAGTCTGCTTTCAGGAACATCAAAACTATTGTTGAATGCTTGGCTGATGAGCTTATCAATGCTGCCAAAGGTTCCTCCAACAGTTATGCTATCAAGAAGAAGGATGAGATTGAAAGGGTTGCCAAAGCCAATCGTGAAGGTGCTTCTGGTACTGAGGACTACAATTTCAAATCAAAGTGGCAACCTGATAAGAAGAGGAAAAAGAAAGGGGTACCTGTTGAGATTAATGACCAGAAGGCAGTTGCACTTGATGCACCAAGCCAATTAAAGATGTTGTGCATGTGGGGTGCAGATGAGCTGGTGAACTGGTGCTATCTATATGTGGTACTACTTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

166

Amino Acids

18.41

Weight (kDa)

9.22

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	13 - 97	2.4e-21	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	367
AclWI	GGATC	2 cut(s)	60, 73
AcvI	CACGTG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	85
AfaI	GTAC	3 cut(s)	307, 369, 483
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	191, 269, 325
AjiI	CACGTC	1 cut(s)	116
AluBI	AGCT	2 cut(s)	208, 454
AluI	AGCT	2 cut(s)	208, 454
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	2 cut(s)	60, 73
ApeKI	GCWGC	1 cut(s)	218
AseI	ATTAAT	1 cut(s)	381
Asp718I	GGTACC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	96, 469
AvaII	GGWCC	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	153
BbrPI	CACGTG	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	3 cut(s)	67, 229, 369
BmsI	GCATC	2 cut(s)	40, 397
BpmI	CTGGAG	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	44
BsaHI	GRCGYC	1 cut(s)	85
Bse1I	ACTGG	3 cut(s)	76, 151, 467
BseGI	GGATG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	101, 300
BseNI	ACTGG	3 cut(s)	76, 151, 467
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	106
BsmBI	CGTCTC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	102, 301
BspLI	GGNNCC	3 cut(s)	67, 229, 369
BspPI	GGATC	2 cut(s)	60, 73
BspT107I	GGYRCC	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	76, 151, 467
BssMI	GATC	1 cut(s)	65
BssNI	GRCGYC	1 cut(s)	85
BssSI	CACGAG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	1 cut(s)	44
BstDEI	CTNAG	2 cut(s)	110, 309
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	69
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	306, 368, 482
CspCI	CAANNNNNGTGG	4 cut(s)	43, 58, 78, 93
CviAII	CATG	1 cut(s)	436
CviJI	RGCY	7 cut(s)	92, 128, 200, 208, 284, 417, 454
CviKI_1	RGCY	7 cut(s)	92, 128, 200, 208, 284, 417, 454
CviQI	GTAC	3 cut(s)	306, 368, 482
DdeI	CTNAG	2 cut(s)	110, 309
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	44
EcoRV	GATATC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	106
FaeI	CATG	1 cut(s)	439
FaiI	YATR	4 cut(s)	243, 437, 475, 477
FatI	CATG	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	93
HgaI	GACGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	85
Hin1II	CATG	1 cut(s)	439
HinfI	GANTC	2 cut(s)	121, 158
HphI	GGTGA	2 cut(s)	96, 469
Hpy166II	GTNNAC	2 cut(s)	41, 460
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	5 cut(s)	139, 155, 169, 250, 290
Hpy8I	GTNNAC	2 cut(s)	41, 460
HpyAV	CCTTC	4 cut(s)	18, 250, 287, 385
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	2 cut(s)	43, 115
HpyCH4V	TGCA	4 cut(s)	401, 410, 435, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	407
HpyF3I	CTNAG	2 cut(s)	110, 309
HpySE526I	ACGT	2 cut(s)	43, 115
Hsp92I	GRCGYC	1 cut(s)	85
Hsp92II	CATG	1 cut(s)	439
KpnI	GGTACC	1 cut(s)	371
Kzo9I	GATC	1 cut(s)	65
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	2 cut(s)	40, 397
MaeII	ACGT	2 cut(s)	43, 115
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	3 cut(s)	59, 265, 361
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	2 cut(s)	319, 419
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	4 cut(s)	117, 241, 304, 345
MseI	TTAA	2 cut(s)	381, 422
Mva1269I	GAATGC	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	407
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	439
NlaIV	GGNNCC	3 cut(s)	67, 229, 369
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	439
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	166
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	166
Ppu21I	YACGTR	1 cut(s)	44
PshBI	ATTAAT	1 cut(s)	381
PspCI	CACGTG	1 cut(s)	44
PspN4I	GGNNCC	3 cut(s)	67, 229, 369
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	3 cut(s)	307, 369, 483
RsaNI	GTAC	3 cut(s)	306, 368, 482
SaqAI	TTAA	2 cut(s)	381, 422
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	65
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	9 cut(s)	46, 109, 118, 210, 229, 298, 343, 373, 456
SfaNI	GCATC	2 cut(s)	40, 397
SinI	GGWCC	1 cut(s)	38
Sse9I	AATT	2 cut(s)	319, 419
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	2 cut(s)	46, 118
TasI	AATT	2 cut(s)	319, 419
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	2 cut(s)	381, 422
Tru9I	TTAA	2 cut(s)	381, 422
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	25
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	381
XceI	RCATGY	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.