Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Forward (+)

14852584 .. 14854730

Gene Structure 2147 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCAACTGAAGTCGTAGCCGAGCCTGTCCAGCAGCTCTACCAGGAGCCTCACAACGATGTCAAGCTCTTCAACAAGTGGACCTTCGATGATATTCAGGTCAGTGACATCTCCCTTGGAGATTACATTGGAGTGACCCAATCCAAGCATGCAATTTATGTGCCTCACACTGCTGGGAGGTATTCAGTCAAGCGTTTCAGGAAAGCTCAGTGCCCTATTGTGGAGAGGCTTACAAACTCTCTCATGATGCACGGGAGAAACAACGGAAAGAAATTGATGGCTGTTAGGATTGTTAGGCACGCAATGGAAATTATCCATTTGCTTACCGACTTGAACCCCATTCAAGTTATTGTTGATGCTGTTGTTAACAGTGGTCCACGTGAAGATGCCACTCGTATTGGATCTGCTGGAGTTGTTAGGCGTCAGGCTGTGGATATCTCACCTCTGAGACGTGTGAATCAGGCTATCTATCTCCTGACAACTGGTGCTCGTGAGTCTGCTTTCAGGAACATCAAAACTATTGCTGAATGCTTGGCTGATGAGCTTATCAATGCTGCCAAAGGTTCCTCCAACAGTTATGCTATCAAGAAGAAGGATGAGATTGAAAGGGTTGCCAAGGCCAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

210

Amino Acids

23.39

Weight (kDa)

9.59

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	50 - 209	2.2e-41	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	30
AcvI	CACGTG	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	421
AfiI	CCNNNNNNNGG	1 cut(s)	220
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	4 cut(s)	73, 334, 344, 605
AjiI	CACGTC	1 cut(s)	452
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	4 cut(s)	37, 67, 206, 544
AluI	AGCT	4 cut(s)	37, 67, 206, 544
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	1 cut(s)	618
ApeKI	GCWGC	2 cut(s)	34, 554
AspS9I	GGNCC	2 cut(s)	81, 374
AsuHPI	GGTGA	1 cut(s)	432
AvaII	GGWCC	2 cut(s)	81, 374
BaeGI	GKGCMC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	489
BbrPI	CACGTG	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	490
BbvI	GCAGC	2 cut(s)	46, 541
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	442
BisI	GCNGC	2 cut(s)	35, 555
BlsI	GCNGC	2 cut(s)	36, 556
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	2 cut(s)	81, 374
BmgBI	CACGTC	1 cut(s)	452
BmgT120I	GGNCC	2 cut(s)	81, 374
BmiI	GGNNCC	2 cut(s)	48, 565
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	3 cut(s)	237, 346, 376
BpmI	CTGGAG	1 cut(s)	429
BsaAI	YACGTR	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	421
BsaJI	CCNNGG	2 cut(s)	115, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	1 cut(s)	487
Bse3DI	GCAATG	1 cut(s)	309
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	115, 615
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	221, 437
BseNI	ACTGG	1 cut(s)	487
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	46, 541
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	490
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	442
BsmBI	CGTCTC	1 cut(s)	442
BsmI	GAATGC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	215, 490
Bsp143I	GATC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	2 cut(s)	220, 438
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	48, 565
BspPI	GGATC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	115, 615
BssMI	GATC	1 cut(s)	401
BssNI	GRCGYC	1 cut(s)	421
BssSI	CACGAG	1 cut(s)	489
BssT1I	CCWWGG	2 cut(s)	115, 615
Bst2BI	CACGAG	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	371, 575
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	150, 300
BstDEI	CTNAG	2 cut(s)	207, 446
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	1 cut(s)	404
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	1 cut(s)	401
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	46, 541
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	620
BtrI	CACGTC	1 cut(s)	452
BtsCI	GGATG	1 cut(s)	601
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	4 cut(s)	109, 168, 215, 376
Cac8I	GCNNGC	2 cut(s)	150, 300
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	81, 374
CseI	GACGC	1 cut(s)	410
CspCI	CAANNNNNGTGG	2 cut(s)	379, 414
CviAII	CATG	2 cut(s)	149, 244
DdeI	CTNAG	2 cut(s)	207, 446
DpnI	GATC	1 cut(s)	403
DpnII	GATC	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco130I	CCWWGG	2 cut(s)	115, 615
Eco32I	GATATC	1 cut(s)	436
Eco47I	GGWCC	2 cut(s)	81, 374
Eco57I	CTGAAG	1 cut(s)	30
Eco72I	CACGTG	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	42
EcoRV	GATATC	1 cut(s)	436
EcoT14I	CCWWGG	2 cut(s)	115, 615
ErhI	CCWWGG	2 cut(s)	115, 615
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	2 cut(s)	152, 247
FaiI	YATR	4 cut(s)	150, 159, 245, 579
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	2 cut(s)	148, 243
Fnu4HI	GCNGC	2 cut(s)	35, 555
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	2 cut(s)	35, 555
GluI	GCNGC	2 cut(s)	35, 555
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	620
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	421
Hin1II	CATG	2 cut(s)	152, 247
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	457, 494
HpaI	GTTAAC	1 cut(s)	367
HphI	GGTGA	1 cut(s)	432
Hpy166II	GTNNAC	3 cut(s)	81, 367, 377
Hpy188I	TCNGA	1 cut(s)	447
Hpy188III	TCNNGA	6 cut(s)	199, 244, 475, 491, 505, 586
Hpy8I	GTNNAC	3 cut(s)	81, 367, 377
HpyAV	CCTTC	2 cut(s)	94, 586
HpyCH4III	ACNGT	2 cut(s)	371, 575
HpyCH4IV	ACGT	2 cut(s)	379, 451
HpyCH4V	TGCA	2 cut(s)	152, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	207, 446
HpySE526I	ACGT	2 cut(s)	379, 451
Hsp92I	GRCGYC	1 cut(s)	421
Hsp92II	CATG	2 cut(s)	152, 247
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	401
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	46, 541
LweI	GCATC	3 cut(s)	237, 346, 376
MaeII	ACGT	2 cut(s)	379, 451
MaeIII	GTNAC	2 cut(s)	104, 133
MalI	GATC	1 cut(s)	403
MboI	GATC	1 cut(s)	401
MboII	GAAGA	3 cut(s)	61, 395, 601
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	2 cut(s)	215, 490
MluCI	AATT	3 cut(s)	153, 272, 309
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	6 cut(s)	60, 171, 174, 219, 453, 577
MseI	TTAA	2 cut(s)	366, 628
MslI	CAYNNNNRTG	2 cut(s)	57, 131
MspR9I	CCNGG	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	533
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	1 cut(s)	401
NlaIII	CATG	2 cut(s)	152, 247
NlaIV	GGNNCC	2 cut(s)	48, 565
NmeAIII	GCCGAG	1 cut(s)	46
NmuCI	GTSAC	2 cut(s)	104, 133
NspI	RCATGY	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	152
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	533
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	36, 556
PleI	GAGTC	1 cut(s)	502
PmaCI	CACGTG	1 cut(s)	380
PmlI	CACGTG	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	42
PspCI	CACGTG	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	48, 565
PspPI	GGNCC	2 cut(s)	81, 374
PsuI	RGATCY	1 cut(s)	401
RseI	CAYNNNNRTG	2 cut(s)	57, 131
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	366, 628
SatI	GCNGC	2 cut(s)	35, 555
Sau3AI	GATC	1 cut(s)	401
Sau96I	GGNCC	2 cut(s)	81, 374
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	215, 490
SfaNI	GCATC	3 cut(s)	237, 346, 376
SinI	GGWCC	2 cut(s)	81, 374
SmiMI	CAYNNNNRTG	2 cut(s)	57, 131
SphI	GCATGC	1 cut(s)	152
Sse9I	AATT	3 cut(s)	153, 272, 309
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	2 cut(s)	115, 615
TaaI	ACNGT	2 cut(s)	371, 575
TaiI	ACGT	2 cut(s)	382, 454
TaqI	TCGA	1 cut(s)	87
TasI	AATT	3 cut(s)	153, 272, 309
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	2 cut(s)	366, 628
Tru9I	TTAA	2 cut(s)	366, 628
TscAI	CASTG	4 cut(s)	109, 175, 215, 376
TseFI	GTSAC	2 cut(s)	104, 133
TseI	GCWGC	2 cut(s)	34, 554
Tsp45I	GTSAC	2 cut(s)	104, 133
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	4 cut(s)	109, 175, 215, 376
VpaK11BI	GGWCC	2 cut(s)	81, 374
XceI	RCATGY	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.