Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

2465987 .. 2466594

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATGCACGGAAGAAACAATGGAAAGAAACTCATGGCTGTCAGGATTATTAGGCATGCAATGGAAATTATCCATTTGCTGACTGATCTGAACCCAGTCCAAGTTATTGTTGATGCTGTCGTTAACAGTGGTCCACGTGAAGATGCAACCCGTATTGGATCTGCTGGAGTTGTTAGGCGTCAAGCTGTGGATATCTCACCTTTGAGACGTGTGAATCAGGCTATCTATCTCCTCACAACTGGTGCTCGTGAGTCGGCTTTCAGAAACGTCAAAACTATTGCGGAATGTTTGGCTGATGAACTTATCAACGCTGCCAAAGGTTCCTCCAACAGTTATGCAATCAAGAAGAAGGATGAGATCGAAAGAGTTGCAAAGGCCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

129

Amino Acids

14.1

Weight (kDa)

10.16

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	1 cut(s)	166
AcvI	CACGTG	1 cut(s)	137
AcyI	GRCGYC	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	209
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	247
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	131
BauI	CACGAG	1 cut(s)	246
BbrPI	CACGTG	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	298
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BcoDI	GTCTC	1 cut(s)	199
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme18I	GGWCC	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	322
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	2 cut(s)	103, 133
BmuI	ACTGGG	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	95, 244
Bse3DI	GCAATG	1 cut(s)	66
BseGI	GGATG	1 cut(s)	358
BseMI	GCAATG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	95, 244
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	199
BsmBI	CGTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	3 cut(s)	85, 158, 357
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	95, 244
BssMI	GATC	3 cut(s)	85, 158, 357
BssNI	GRCGYC	1 cut(s)	178
BssSI	CACGAG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	128, 332, 383
BstACI	GRCGYC	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	3 cut(s)	88, 161, 360
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	3 cut(s)	85, 158, 357
BstNSI	RCATGY	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	158
BstYI	RGATCY	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	377
BtrI	CACGTC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	167
CviAII	CATG	2 cut(s)	34, 56
CviJI	RGCY	6 cut(s)	38, 185, 221, 257, 293, 377
CviKI_1	RGCY	6 cut(s)	38, 185, 221, 257, 293, 377
DpnI	GATC	3 cut(s)	87, 160, 359
DpnII	GATC	3 cut(s)	85, 158, 357
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	131
Eco72I	CACGTG	1 cut(s)	137
EcoRV	GATATC	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	199
FaeI	CATG	2 cut(s)	37, 59
FaiI	YATR	3 cut(s)	35, 57, 336
FatI	CATG	2 cut(s)	33, 55
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	377
HgaI	GACGC	1 cut(s)	167
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	37, 59
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	214, 251
HpaI	GTTAAC	1 cut(s)	124
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	124, 134
Hpy188I	TCNGA	2 cut(s)	90, 263
Hpy188III	TCNNGA	3 cut(s)	43, 248, 343
Hpy8I	GTNNAC	2 cut(s)	124, 134
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	3 cut(s)	128, 332, 383
HpyCH4IV	ACGT	3 cut(s)	136, 208, 267
HpyCH4V	TGCA	5 cut(s)	7, 59, 146, 338, 371
HpySE526I	ACGT	3 cut(s)	136, 208, 267
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	37, 59
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	85, 158, 357
LpnPI	CCDG	5 cut(s)	28, 108, 150, 203, 225
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	2 cut(s)	103, 133
MaeII	ACGT	3 cut(s)	136, 208, 267
MalI	GATC	3 cut(s)	87, 160, 359
MboI	GATC	3 cut(s)	85, 158, 357
MboII	GAAGA	3 cut(s)	24, 152, 358
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	2 cut(s)	242, 334
MseI	TTAA	2 cut(s)	123, 385
NdeII	GATC	3 cut(s)	85, 158, 357
NlaIII	CATG	2 cut(s)	37, 59
NlaIV	GGNNCC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	313
PleI	GAGTC	1 cut(s)	259
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	259
Ppu21I	YACGTR	1 cut(s)	137
PspCI	CACGTG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	123, 385
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	3 cut(s)	85, 158, 357
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	6 cut(s)	139, 187, 202, 211, 270, 322
SfaNI	GCATC	2 cut(s)	103, 133
SinI	GGWCC	1 cut(s)	131
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	1 cut(s)	281
TaaI	ACNGT	3 cut(s)	128, 332, 383
TaiI	ACGT	3 cut(s)	139, 211, 270
TaqI	TCGA	1 cut(s)	360
TasI	AATT	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	123, 385
Tru9I	TTAA	2 cut(s)	123, 385
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	131
XceI	RCATGY	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.