Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

4977988 .. 4980692

Gene Structure 2705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1044700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAACCAACGCAGCCGCACTATGATGTCAAGCTCTTCAACCGCTGGAGCTTCGACGATGTCCAGGTCAGTGACATTTCACTGGCGGATTACATTGGAGTTGCACCTTCCAAGCATGCAACTTATGTACCTCACACTGCTGGAAGATACTCGGTAAAACGATTCAGGAAAGCTCAGTGCCCTATTGTGGAGAGGCTTACAAACTCACTCATGATGCACGGGAGAAACAATGGAAAGAAACTTATGGCTGTCAGGATTATTAGGCACGCGATGGAAATTATCCATTTGCTAACTGATCTGAACCCAATCCAAGTTATTGTTGATGCTGTTGTTAACAGTGGTCCACGTGAAGATGCAACTCGTATTGGATCTGCTGGAGTTGTTAGGCGTCAAGCTGTGGATATCTCACCTTTGAGACGTGTAAATCAGGCTATCTATCTCCTCACAACTGGTGCTCGTGAGTCTGCTTTCAGGAACGTCAAAACTATTGCTGAGTGTTTGGCTGATGAGCTTATTAATGCTGCCAAAGGTTCCTCTAACAGTTATGCAATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

199

Amino Acids

22.15

Weight (kDa)

9.82

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	38 - 198	2.3e-41	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AciI	CCGC	3 cut(s)	17, 43, 86
AclWI	GGATC	1 cut(s)	376
AcvI	CACGTG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	388
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	40, 572
AjiI	CACGTC	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	5 cut(s)	34, 51, 173, 395, 511
AluI	AGCT	5 cut(s)	34, 51, 173, 395, 511
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	13, 521
AseI	ATTAAT	1 cut(s)	516
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	341
BaeGI	GKGCMC	1 cut(s)	182
BaeI	ACNNNNGTAYC	2 cut(s)	111, 144
BauI	CACGAG	1 cut(s)	456
BbrPI	CACGTG	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	25, 508
BccI	CCATC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	14, 17, 522
BlsI	GCNGC	3 cut(s)	15, 18, 523
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	341
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	2 cut(s)	6, 532
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	3 cut(s)	204, 313, 343
BpmI	CTGGAG	2 cut(s)	67, 396
BsaAI	YACGTR	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	2 cut(s)	87, 454
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	582
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	188, 483
BseNI	ACTGG	2 cut(s)	87, 454
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	25, 508
Bsh1236I	CGCG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	409
BsmBI	CGTCTC	1 cut(s)	409
Bsp1286I	GDGCHC	2 cut(s)	182, 457
Bsp143I	GATC	2 cut(s)	295, 368
BspACI	CCGC	3 cut(s)	17, 43, 86
BspCNI	CTCAG	2 cut(s)	187, 484
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	6, 532
BspPI	GGATC	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	87, 454
BssECI	CCNNGG	1 cut(s)	582
BssMI	GATC	2 cut(s)	295, 368
BssNI	GRCGYC	1 cut(s)	388
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	338, 542, 593
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	388
BstBAI	YACGTR	1 cut(s)	347
BstC8I	GCNNGC	2 cut(s)	117, 267
BstDEI	CTNAG	2 cut(s)	174, 492
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	2 cut(s)	298, 371
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	2 cut(s)	295, 368
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	2 cut(s)	25, 508
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BtgZI	GCGATG	1 cut(s)	284
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	568
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	5 cut(s)	76, 80, 135, 182, 343
Cac8I	GCNNGC	2 cut(s)	117, 267
CciI	TCATGA	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	116, 211
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	174, 492
DpnI	GATC	2 cut(s)	297, 370
DpnII	GATC	2 cut(s)	295, 368
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	341
Eco72I	CACGTG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	2 cut(s)	119, 214
FaiI	YATR	6 cut(s)	24, 117, 126, 212, 245, 546
FatI	CATG	2 cut(s)	115, 210
Fnu4HI	GCNGC	3 cut(s)	14, 17, 522
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	3 cut(s)	14, 17, 522
GluI	GCNGC	3 cut(s)	14, 17, 522
GsuI	CTGGAG	2 cut(s)	67, 396
HgaI	GACGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	119, 214
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	162, 461
HpaI	GTTAAC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	2 cut(s)	334, 344
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	6 cut(s)	166, 211, 253, 458, 472, 553
Hpy8I	GTNNAC	2 cut(s)	334, 344
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	117, 553
HpyCH4III	ACNGT	3 cut(s)	338, 542, 593
HpyCH4IV	ACGT	3 cut(s)	346, 418, 477
HpyCH4V	TGCA	5 cut(s)	104, 119, 217, 356, 548
HpyF3I	CTNAG	2 cut(s)	174, 492
HpySE526I	ACGT	3 cut(s)	346, 418, 477
Hsp92I	GRCGYC	1 cut(s)	388
Hsp92II	CATG	2 cut(s)	119, 214
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	295, 368
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	2 cut(s)	25, 508
LweI	GCATC	3 cut(s)	204, 313, 343
MaeII	ACGT	3 cut(s)	346, 418, 477
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	2 cut(s)	297, 370
MboI	GATC	2 cut(s)	295, 368
MboII	GAAGA	4 cut(s)	28, 156, 362, 568
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	182, 457
MluCI	AATT	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	4 cut(s)	141, 186, 452, 544
MseI	TTAA	3 cut(s)	333, 516, 595
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	269
NdeII	GATC	2 cut(s)	295, 368
NlaIII	CATG	2 cut(s)	119, 214
NlaIV	GGNNCC	2 cut(s)	6, 532
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	119
PaeI	GCATGC	1 cut(s)	119
PagI	TCATGA	1 cut(s)	210
PciSI	GCTCTTC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	162
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	15, 18, 523
PleI	GAGTC	1 cut(s)	469
PmaCI	CACGTG	1 cut(s)	347
PmlI	CACGTG	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	469
Ppu21I	YACGTR	1 cut(s)	347
PshBI	ATTAAT	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	63
PspCI	CACGTG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	6, 532
PspPI	GGNCC	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	368
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	24
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	333, 516, 595
SatI	GCNGC	3 cut(s)	14, 17, 522
Sau3AI	GATC	2 cut(s)	295, 368
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	2 cut(s)	182, 457
SfaNI	GCATC	3 cut(s)	204, 313, 343
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	24
SphI	GCATGC	1 cut(s)	119
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	3 cut(s)	17, 43, 86
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	3 cut(s)	338, 542, 593
TaiI	ACGT	3 cut(s)	349, 421, 480
TaqI	TCGA	1 cut(s)	54
TasI	AATT	1 cut(s)	276
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	162
Tru1I	TTAA	3 cut(s)	333, 516, 595
Tru9I	TTAA	3 cut(s)	333, 516, 595
TscAI	CASTG	5 cut(s)	76, 87, 142, 182, 343
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	13, 521
Tsp45I	GTSAC	1 cut(s)	71
TspRI	CASTG	5 cut(s)	76, 87, 142, 182, 343
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	516
XceI	RCATGY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.