Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

56442349 .. 56443630

Gene Structure 1282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCAGCCGCCGTCGAATCAGCTCCCGTTTCCCAAGAGAAAATTCTGCCCCACAACGACGTCAAGCTCTTCAACCGCTGGAGCTTCGACGACGTTCAGGTGAGCGACATCTCCCTGCAAGATTACATCGGCGTCGCTCAGGCGAAGCACGCCACCTATGTGCCTCACACTGCTGGCAGGTACTCGGTGAAGCGGTTCAGGAAGGCTCAGTGCCCAATCGTCGAGAGGCTCACCAACTCTCTCATGATGCACGGAAGAAACAACGGCAAGAAGCTGATGGCTGTTCGCATTGTCAGGCACGCAATGGAGATCATCCATTTGCTCACTGACCTCAACCCTATTCAGGTCATCGTCGACGCTGTTGTTAACAGGTATATATGGATTGCCAACGTGTTTAGGGTTTGGGCTAATAGCATTTTTAGCATTGAAGGGATTGTGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

147

Amino Acids

16.7

Weight (kDa)

9.47

Isoelectric Point (pI)

32.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	48 - 123	8.5e-13	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	3 cut(s)	9, 76, 193
AcsI	RAATTY	1 cut(s)	42
AcyI	GRCGYC	2 cut(s)	60, 132
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	2 cut(s)	73, 428
AjuI	GAANNNNNNNTTGG	2 cut(s)	27, 59
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	4 cut(s)	23, 67, 84, 274
AluI	AGCT	4 cut(s)	23, 67, 84, 274
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	42
Asp700I	GAANNNNTTC	1 cut(s)	194
AsuHPI	GGTGA	3 cut(s)	112, 199, 223
BaeGI	GKGCMC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	168
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
BmsI	GCATC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	60, 132
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse3DI	GCAATG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	152, 221
BseSI	GKGCMC	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	309
BspACI	CCGC	3 cut(s)	9, 76, 193
BspCNI	CTCAG	2 cut(s)	151, 220
BspHI	TCATGA	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	309
BssMI	GATC	1 cut(s)	309
BssNI	GRCGYC	2 cut(s)	60, 132
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	2 cut(s)	60, 132
BstC8I	GCNNGC	3 cut(s)	150, 175, 300
BstDEI	CTNAG	2 cut(s)	138, 207
BstF5I	GGATG	1 cut(s)	312
BstKTI	GATC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 420
BstSLI	GKGCMC	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	312
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	3 cut(s)	168, 215, 324
BveI	ACCTGC	1 cut(s)	168
Cac8I	GCNNGC	3 cut(s)	150, 175, 300
CciI	TCATGA	1 cut(s)	243
CseI	GACGC	2 cut(s)	121, 365
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	9 cut(s)	8, 23, 67, 84, 206, 229, 274, 281, 407
CviKI_1	RGCY	9 cut(s)	8, 23, 67, 84, 206, 229, 274, 281, 407
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	138, 207
DpnI	GATC	1 cut(s)	311
DpnII	GATC	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
FaeI	CATG	1 cut(s)	247
FaiI	YATR	5 cut(s)	159, 245, 375, 377, 379
FatI	CATG	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	6, 9
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	100
HgaI	GACGC	2 cut(s)	121, 365
Hin1I	GRCGYC	2 cut(s)	60, 132
Hin1II	CATG	1 cut(s)	247
HincII	GTYRAC	2 cut(s)	355, 367
HindII	GTYRAC	2 cut(s)	355, 367
HinfI	GANTC	1 cut(s)	17
HpaI	GTTAAC	1 cut(s)	367
HphI	GGTGA	3 cut(s)	112, 199, 223
Hpy166II	GTNNAC	2 cut(s)	355, 367
Hpy188III	TCNNGA	3 cut(s)	199, 223, 244
Hpy8I	GTNNAC	2 cut(s)	355, 367
Hpy99I	CGWCG	8 cut(s)	17, 62, 92, 95, 137, 224, 356, 359
HpyAV	CCTTC	2 cut(s)	196, 422
HpyCH4IV	ACGT	3 cut(s)	60, 93, 390
HpyCH4V	TGCA	2 cut(s)	118, 250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 420
HpyF3I	CTNAG	2 cut(s)	138, 207
HpySE526I	ACGT	3 cut(s)	60, 93, 390
Hsp92I	GRCGYC	2 cut(s)	60, 132
Hsp92II	CATG	1 cut(s)	247
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	309
LguI	GCTCTTC	1 cut(s)	74
LmnI	GCTCC	2 cut(s)	28, 81
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	237
MaeII	ACGT	3 cut(s)	60, 93, 390
MalI	GATC	1 cut(s)	311
MboI	GATC	1 cut(s)	309
MboII	GAAGA	2 cut(s)	61, 267
MhlI	GDGCHC	1 cut(s)	215
MluCI	AATT	1 cut(s)	42
MnlI	CCTC	3 cut(s)	174, 219, 341
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	2 cut(s)	366, 442
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	149, 420
NdeII	GATC	1 cut(s)	309
NlaIII	CATG	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	158
PagI	TCATGA	1 cut(s)	243
PciSI	GCTCTTC	1 cut(s)	74
PdmI	GAANNNNTTC	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	7, 10
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	366, 442
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	215
SfaNI	GCATC	1 cut(s)	237
SgrDI	CGTCGACG	1 cut(s)	353
SmiMI	CAYNNNNRTG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	3 cut(s)	9, 76, 193
TaiI	ACGT	3 cut(s)	63, 96, 393
TaqI	TCGA	4 cut(s)	15, 87, 222, 354
TasI	AATT	1 cut(s)	42
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	366, 442
Tru9I	TTAA	2 cut(s)	366, 442
TscAI	CASTG	3 cut(s)	175, 215, 331
TseI	GCWGC	1 cut(s)	5
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	3 cut(s)	175, 215, 331
XapI	RAATTY	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	194
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.