Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

50102864 .. 50104375

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G026660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGTGCAAGGTATGCCGGCGGGCTTTGCTTGGATGATTAAGTTGCAACGAGGTACTCAGTCAGACGATTCAAGAAAGCCCAATGCTGAGACTTACAAACTCGCTAATGATGCACGGGAGAAACAACGGGAAGAAACTGATGGCCATGTCATTATTATTAGGTATGCAATGGAGATTATCGATTTGCTAACTGATTTTAACCCCATCAATGTTATTGTCGACGCTGATGTTAATAGTGCTCCACGTGAAGACGCAGCACCTATTGGCTCTACTGGTGATGTTATCAGGCTGTGGATATCTGACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

102

Amino Acids

11.42

Weight (kDa)

4.72

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	142
AcvI	CACGTG	1 cut(s)	245
AfaI	GTAC	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	241
Alw26I	GTCTC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	144
BbrPI	CACGTG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	2 cut(s)	134, 212
BcoDI	GTCTC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	255
Bsa29I	ATCGAT	1 cut(s)	180
BsaAI	YACGTR	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	180
BseGI	GGATG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	71, 78
BseNI	ACTGG	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	144
BshVI	ATCGAT	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	17
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	144
Bsp1286I	GDGCHC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	144
BspCNI	CTCAG	2 cut(s)	70, 79
BspDI	ATCGAT	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	16
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDEI	CTNAG	2 cut(s)	57, 87
BstF5I	GGATG	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 26, 110
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	255
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	144
BsuTUI	ATCGAT	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	2 cut(s)	18, 22
Cfr10I	RCCGGY	1 cut(s)	16
ClaI	ATCGAT	1 cut(s)	180
CseI	GACGC	2 cut(s)	230, 260
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	5 cut(s)	24, 79, 144, 267, 289
CviKI_1	RGCY	5 cut(s)	24, 79, 144, 267, 289
CviQI	GTAC	1 cut(s)	54
DdeI	CTNAG	2 cut(s)	57, 87
EaeI	YGGCCR	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	297
Eco72I	CACGTG	1 cut(s)	245
EcoRV	GATATC	1 cut(s)	297
FaeI	CATG	1 cut(s)	149
FaiI	YATR	3 cut(s)	14, 147, 165
FatI	CATG	1 cut(s)	145
FauI	CCCGC	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	144
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	2 cut(s)	230, 260
Hin1II	CATG	1 cut(s)	149
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	64, 301
Hpy188III	TCNNGA	1 cut(s)	72
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	7, 46, 113, 167
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 26, 110
HpyF3I	CTNAG	2 cut(s)	57, 87
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	149
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	3 cut(s)	30, 258, 271
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	244
MboII	GAAGA	2 cut(s)	143, 260
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	144
MnlI	CCTC	1 cut(s)	44
Mox20I	TGGCCA	1 cut(s)	144
MroNI	GCCGGC	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	3 cut(s)	39, 198, 231
Msp20I	TGGCCA	1 cut(s)	144
MspI	CCGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	13, 26, 110
NaeI	GCCGGC	1 cut(s)	18
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	256
PmaCI	CACGTG	1 cut(s)	245
PmlI	CACGTG	1 cut(s)	245
Ppu21I	YACGTR	1 cut(s)	245
PspCI	CACGTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	3 cut(s)	39, 198, 231
SatI	GCNGC	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	5 cut(s)	13, 55, 164, 247, 262
SfaNI	GCATC	1 cut(s)	100
SsiI	CCGC	1 cut(s)	20
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	180, 219
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	39, 198, 231
Tru9I	TTAA	3 cut(s)	39, 198, 231
TseI	GCWGC	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.