Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Forward (+)

5637727 .. 5640525

Gene Structure 2799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1049500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCCACTGCTGATATAGCTGCTCCGGTGCTGGAGCCGACACAGCCGCACTACGACGTGAAGCTCTTCAACCGATGGAGCTTTGATGATGTCCAGGTCAGTGACATTTCACTGGCGGATTATGTTGGAGTTGCACCTTCCAAGCATGCGACGTATGTACCTCACACTGCTGGGAGATACTCTGTCAAACGATTCAGGAAAGCTCAGTGCCCTATTGTGGAGAGGCTTACAAACTCACTCATGATGCACGGGAGAAACAATGGAAAGAAACTCATGGCTGTCAGAATTGTTAGGCACGCGATGGAAATTATCCATTTGCTAACAGATCTGAACCCAATCCAAGTTATTGTTGATGCTGTTGTTAACAGTGGTCCACGTGAAGATGCAACTCGTATTGGATCTGCTGGAGTTGTTAGGCGTCAGGCTGTGGATATTTCACCTCTGAGACGTGTGAATCAGGCTATCTATCTCCTCACAACCGGCGCTCGTGAGTCTGCTTTCAGGAACGTCAAGACTATTGCAGAGTGTTTGGCCGATGAACTTATTAATGCTGCCAAAGGTTCCTCTAACAGTTACGCAATCAAGAAGAAGGATGAGATCGAACGAGTCGCTAAGGCCAACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

209

Amino Acids

23.04

Weight (kDa)

9.72

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	48 - 208	1.4e-41	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AciI	CCGC	2 cut(s)	47, 116
AclWI	GGATC	1 cut(s)	406
AcoI	YGGCCR	2 cut(s)	3, 531
AcvI	CACGTG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	418
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	70
AjiI	CACGTC	2 cut(s)	58, 449
AjnI	CCWGG	1 cut(s)	93
AluBI	AGCT	4 cut(s)	20, 64, 81, 203
AluI	AGCT	4 cut(s)	20, 64, 81, 203
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	1 cut(s)	406
AoxI	GGCC	3 cut(s)	3, 531, 615
ApeKI	GCWGC	2 cut(s)	20, 551
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	429
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	141, 174
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	486
BbrPI	CACGTG	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	7, 538
BccI	CCATC	2 cut(s)	69, 295
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	439
BfoI	RGCGCY	1 cut(s)	486
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	3 cut(s)	21, 47, 552
BlsI	GCNGC	3 cut(s)	22, 48, 553
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	1 cut(s)	371
BmgBI	CACGTC	2 cut(s)	58, 449
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	36, 562
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	3 cut(s)	234, 343, 373
BpmI	CTGGAG	2 cut(s)	53, 426
Bpu10I	CCTNAGC	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	479
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	598
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	218, 434
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	7, 538
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	5, 533, 617
BsiSI	CCGG	2 cut(s)	26, 480
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	439
BsmBI	CGTCTC	1 cut(s)	439
BsnI	GGCC	3 cut(s)	5, 533, 617
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	3 cut(s)	325, 398, 597
BspACI	CCGC	2 cut(s)	47, 116
BspANI	GGCC	3 cut(s)	5, 533, 617
BspCNI	CTCAG	2 cut(s)	217, 435
BspFNI	CGCG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	36, 562
BspPI	GGATC	1 cut(s)	406
BspQI	GCTCTTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	479
BssMI	GATC	3 cut(s)	325, 398, 597
BssNI	GRCGYC	1 cut(s)	418
BssSI	CACGAG	1 cut(s)	486
Bst2BI	CACGAG	1 cut(s)	486
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	3 cut(s)	368, 572, 623
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	147, 297
BstDEI	CTNAG	3 cut(s)	204, 443, 612
BstF5I	GGATG	1 cut(s)	598
BstFNI	CGCG	1 cut(s)	299
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	3 cut(s)	328, 401, 600
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	3 cut(s)	325, 398, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 43
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	7, 538
BstX2I	RGATCY	2 cut(s)	325, 398
BstYI	RGATCY	2 cut(s)	325, 398
BsuRI	GGCC	3 cut(s)	5, 533, 617
BtgZI	GCGATG	1 cut(s)	314
BtrI	CACGTC	2 cut(s)	58, 449
BtsCI	GGATG	1 cut(s)	598
BtsI	GCAGTG	2 cut(s)	6, 165
BtsIMutI	CAGTG	6 cut(s)	6, 106, 110, 165, 212, 373
Cac8I	GCNNGC	2 cut(s)	147, 297
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	3 cut(s)	146, 241, 274
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	3 cut(s)	204, 443, 612
DpnI	GATC	3 cut(s)	327, 400, 599
DpnII	GATC	3 cut(s)	325, 398, 597
EaeI	YGGCCR	2 cut(s)	3, 531
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	371
Eco72I	CACGTG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	93
Esp3I	CGTCTC	1 cut(s)	439
FaeI	CATG	3 cut(s)	149, 244, 277
FaiI	YATR	6 cut(s)	17, 123, 147, 156, 242, 275
FatI	CATG	3 cut(s)	145, 240, 273
Fnu4HI	GCNGC	3 cut(s)	21, 47, 552
FokI	GGATG	1 cut(s)	605
Fsp4HI	GCNGC	3 cut(s)	21, 47, 552
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	3 cut(s)	21, 47, 552
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	2 cut(s)	53, 426
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	5, 533, 617
HapII	CCGG	2 cut(s)	26, 480
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	418
Hin1II	CATG	3 cut(s)	149, 244, 277
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	4 cut(s)	192, 454, 491, 606
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	2 cut(s)	26, 480
HphI	GGTGA	1 cut(s)	429
Hpy166II	GTNNAC	2 cut(s)	364, 374
Hpy188I	TCNGA	3 cut(s)	284, 330, 444
Hpy188III	TCNNGA	6 cut(s)	196, 241, 488, 502, 511, 583
Hpy8I	GTNNAC	2 cut(s)	364, 374
Hpy99I	CGWCG	2 cut(s)	59, 154
HpyAV	CCTTC	2 cut(s)	147, 583
HpyCH4III	ACNGT	3 cut(s)	368, 572, 623
HpyCH4IV	ACGT	5 cut(s)	57, 152, 376, 448, 507
HpyCH4V	TGCA	4 cut(s)	134, 247, 386, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 43
HpyF3I	CTNAG	3 cut(s)	204, 443, 612
HpySE526I	ACGT	5 cut(s)	57, 152, 376, 448, 507
Hsp92I	GRCGYC	1 cut(s)	418
Hsp92II	CATG	3 cut(s)	149, 244, 277
HspAI	GCGC	1 cut(s)	483
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	325, 398, 597
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	3 cut(s)	28, 34, 78
Lsp1109I	GCAGC	2 cut(s)	7, 538
LweI	GCATC	3 cut(s)	234, 343, 373
MaeII	ACGT	5 cut(s)	57, 152, 376, 448, 507
MaeIII	GTNAC	2 cut(s)	101, 572
MalI	GATC	3 cut(s)	327, 400, 599
MboI	GATC	3 cut(s)	325, 398, 597
MboII	GAAGA	3 cut(s)	58, 392, 598
MflI	RGATCY	2 cut(s)	325, 398
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	285, 306
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	500, 615
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	171, 216, 450, 482, 574
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	363, 546, 625
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	26, 480
MspR9I	CCNGG	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	17, 43
NdeII	GATC	3 cut(s)	325, 398, 597
NlaIII	CATG	3 cut(s)	149, 244, 277
NlaIV	GGNNCC	2 cut(s)	36, 562
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	1 cut(s)	149
PaeI	GCATGC	1 cut(s)	149
PagI	TCATGA	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	192, 454
PkrI	GCNGC	3 cut(s)	22, 48, 553
PleI	GAGTC	2 cut(s)	499, 614
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	2 cut(s)	499, 614
Ppu21I	YACGTR	1 cut(s)	377
PshBI	ATTAAT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	93
PspCI	CACGTG	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	36, 562
PspPI	GGNCC	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	325, 398
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SapI	GCTCTTC	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	363, 546, 625
SatI	GCNGC	3 cut(s)	21, 47, 552
Sau3AI	GATC	3 cut(s)	325, 398, 597
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	500, 615
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	3 cut(s)	234, 343, 373
SinI	GGWCC	1 cut(s)	371
SphI	GCATGC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	285, 306
SsiI	CCGC	2 cut(s)	47, 116
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	368, 572, 623
TaiI	ACGT	5 cut(s)	60, 155, 379, 451, 510
TaqI	TCGA	1 cut(s)	600
TasI	AATT	2 cut(s)	285, 306
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	192, 454
Tru1I	TTAA	3 cut(s)	363, 546, 625
Tru9I	TTAA	3 cut(s)	363, 546, 625
TscAI	CASTG	6 cut(s)	13, 106, 117, 172, 212, 373
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	20, 551
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	552
TspRI	CASTG	6 cut(s)	13, 106, 117, 172, 212, 373
VpaK11BI	GGWCC	1 cut(s)	371
VspI	ATTAAT	1 cut(s)	546
XceI	RCATGY	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.