Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001136

Physical Location & Seq

Genomic Coordinates Reverse (-)

3777824 .. 3779545

Gene Structure 1722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCACCGCCGCAGATGTTGACGCTGAGATTCAGCAGGCGCTCACTAACGAAGTCAAGCTCTTCAACCGCTGGACCTATGACGACGTTACGGTCACAGACATCAGTCTTGTTGACTACATTGGAGTTCAGGCAGCTAAACATGCTACCTTTGTTCCCCACACCGCTGGAAGATACTCTGTGAAGAGATTCAGGAAGGCTCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTCATGATGCACGGGAGGAACAACGGTAAGAAATTGATGGCTGTCAGGATCGTCAAGCACGCCATGGAGATTATCCACCTCTTGTCTGACTTGAACCCAATTCAGGTCATCATTGACGCCATTGTCAACAGTGGTCCACGTGAAGATGCTACCAGAATTGGATCTGCTGGTGTTGTTAGGAGACAAGCTGTTGATATCTCTCCTCTAAGACGTGTTAACCAGGCTATCTTCTTGATTACCACTGGTGCTCGTGAAGCTGCTTTCAGAAACATCAAGACTATAGCTGAGTGCCTTGCTGATGAATTGATCAACGCAGCCAAGGGCTCTTCCAACAGCTATGCCATCAAGAAGAAGGATGAGATTGAAAGAGTTGCCAAGGCTAATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S7

Protein Analysis

207

Amino Acids

22.92

Weight (kDa)

9.65

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7	PF00177	46 - 207	1.8e-40	Ribosomal protein S7p/S5e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37270 AT2G37270 AT3G11940 AT3G11940
fragaria_vesca	FvH4_2g26500 FvH4_3g33535 FvH4_4g10002 FvH4_5g31441 FvH4_6g14761 FvH4_6g21310 FvH4_6g21310
malus_domestica	MD04G1033100.v1.1 MD12G1044700.v1.1 MD12G1049500.v1.1 MD12G1049600.v1.1 MD14G1043500.v1.1 MD14G1048400.v1.1 MD14G1048600.v1.1
prunus_persica	Prupe.1G502000_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086600_v2.0.a1 Prupe.7G086700_v2.0.a1 Prupe.7G086700_v2.0.a1
pyrus_communis	pycom04g02720 pycom12g03850 pycom13g28970 pycom14g00940 pycom14g03700
rosa_chinensis	RchiOBHm_Chr0c36g0502911 RchiOBHm_Chr2g0129001 RchiOBHm_Chr3g0477901 RchiOBHm_Chr6g0295301
rosa_laevigata	RLG00000011814 RLG00000023680
rosa_multiflora	Rmu_co8311483.1_g000001 Rmu_sc0005991.1_g000014 Rmu_sc0007232.1_g000007
rosa_roxburghii	Rroxscaffold_171G00441470 Rroxscaffold_4G00298910 Rroxscaffold_6G00403610 Rroxscaffold_7G00172590
rosa_rugosa	Rorug01G0206000 Rorug03G0163800 Rorug03G0163800 Rorug06G0250000
rosa_samantha	Rh3CG242100 Rh3DG241400 Rh6AG363100 Rh6BG371100 Rh6CG377700 Rh6DG363800
rosa_wichuraiana	Rw0G008510 Rw2G027230 Rw3G019340 Rw6G026660 Rw6G031680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	92, 356
AciI	CCGC	4 cut(s)	9, 12, 70, 165
AclWI	GGATC	2 cut(s)	290, 403
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	3 cut(s)	67, 328, 599
AjiI	CACGTC	1 cut(s)	446
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	6 cut(s)	61, 137, 422, 491, 518, 570
AluI	AGCT	6 cut(s)	61, 137, 422, 491, 518, 570
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	2 cut(s)	290, 403
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	134, 491, 548
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	75, 368
AsuHPI	GGTGA	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	75, 368
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	560
BauI	CACGAG	1 cut(s)	483
BbrPI	CACGTG	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	3 cut(s)	146, 478, 560
BccI	CCATC	2 cut(s)	265, 584
BciT130I	CCWGG	1 cut(s)	455
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	409
BfmI	CTRYAG	1 cut(s)	513
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	4 cut(s)	12, 135, 492, 549
BlsI	GCNGC	4 cut(s)	13, 136, 493, 550
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	2 cut(s)	75, 368
BmgBI	CACGTC	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	75, 368
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	2 cut(s)	231, 370
BoxI	GACNNNNGTC	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	3 cut(s)	297, 552, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	3 cut(s)	297, 552, 609
BseGI	GGATG	1 cut(s)	595
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	3 cut(s)	18, 215, 510
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	426
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	146, 478, 560
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	484
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	409
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	209, 484, 560
Bsp143I	GATC	3 cut(s)	282, 395, 540
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	4 cut(s)	9, 12, 70, 165
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	19, 214, 511
BspHI	TCATGA	1 cut(s)	237
BspPI	GGATC	2 cut(s)	290, 403
BspQI	GCTCTTC	2 cut(s)	68, 565
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	3 cut(s)	297, 552, 609
BssMI	GATC	3 cut(s)	282, 395, 540
BssNI	GRCGYC	1 cut(s)	351
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	3 cut(s)	297, 552, 609
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	3 cut(s)	94, 260, 365
Bst6I	CTCTTC	3 cut(s)	68, 179, 565
BstACI	GRCGYC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	39, 294
BstDEI	CTNAG	4 cut(s)	27, 201, 440, 519
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	595
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	3 cut(s)	285, 398, 543
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	3 cut(s)	282, 395, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 143, 488
BstNI	CCWGG	1 cut(s)	455
BstNSI	RCATGY	1 cut(s)	146
BstPAI	GACNNNNGTC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	453
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	3 cut(s)	146, 478, 560
BstX2I	RGATCY	1 cut(s)	395
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	297
BtrI	CACGTC	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	595
BtsIMutI	CAGTG	3 cut(s)	209, 370, 474
Cac8I	GCNNGC	2 cut(s)	39, 294
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	2 cut(s)	75, 368
CseI	GACGC	2 cut(s)	32, 359
CviAII	CATG	3 cut(s)	143, 238, 298
DdeI	CTNAG	4 cut(s)	27, 201, 440, 519
DpnI	GATC	3 cut(s)	284, 397, 542
DpnII	GATC	3 cut(s)	282, 395, 540
DrdI	GACNNNNNNGTC	2 cut(s)	92, 356
DseDI	GACNNNNNNGTC	2 cut(s)	92, 356
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	68, 179, 565
EarI	CTCTTC	3 cut(s)	68, 179, 565
Eco130I	CCWWGG	3 cut(s)	297, 552, 609
Eco24I	GRGCYC	1 cut(s)	560
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	75, 368
Eco72I	CACGTG	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	453
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	3 cut(s)	297, 552, 609
EcoT38I	GRGCYC	1 cut(s)	560
ErhI	CCWWGG	3 cut(s)	297, 552, 609
FaeI	CATG	3 cut(s)	146, 241, 301
FaiI	YATR	6 cut(s)	81, 144, 239, 299, 515, 573
FatI	CATG	3 cut(s)	142, 237, 297
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	4 cut(s)	12, 135, 492, 549
FokI	GGATG	1 cut(s)	602
FriOI	GRGCYC	1 cut(s)	560
Fsp4HI	GCNGC	4 cut(s)	12, 135, 492, 549
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	4 cut(s)	12, 135, 492, 549
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	2 cut(s)	32, 359
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	146, 241, 301
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HincII	GTYRAC	4 cut(s)	22, 115, 361, 451
HindII	GTYRAC	4 cut(s)	22, 115, 361, 451
HinfI	GANTC	2 cut(s)	31, 189
HpaI	GTTAAC	1 cut(s)	451
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	5 cut(s)	22, 115, 361, 371, 451
Hpy188I	TCNGA	2 cut(s)	322, 500
Hpy188III	TCNNGA	7 cut(s)	193, 238, 280, 466, 485, 508, 580
Hpy8I	GTNNAC	5 cut(s)	22, 115, 361, 371, 451
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	190, 580
HpyCH4III	ACNGT	3 cut(s)	94, 260, 365
HpyCH4IV	ACGT	3 cut(s)	87, 373, 445
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 143, 488
HpyF3I	CTNAG	4 cut(s)	27, 201, 440, 519
HpySE526I	ACGT	3 cut(s)	87, 373, 445
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	3 cut(s)	146, 241, 301
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	540
KspAI	GTTAAC	1 cut(s)	451
Kzo9I	GATC	3 cut(s)	282, 395, 540
LguI	GCTCTTC	2 cut(s)	68, 565
Lsp1109I	GCAGC	3 cut(s)	146, 478, 560
LweI	GCATC	2 cut(s)	231, 370
MaeII	ACGT	3 cut(s)	87, 373, 445
MaeIII	GTNAC	2 cut(s)	88, 94
MalI	GATC	3 cut(s)	284, 397, 542
MboI	GATC	3 cut(s)	282, 395, 540
MboII	GAAGA	7 cut(s)	55, 183, 196, 389, 454, 552, 595
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	3 cut(s)	209, 484, 560
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	266, 333, 390, 536
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	4 cut(s)	213, 243, 323, 447
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	450, 622
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	72, 167
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	11, 143, 488
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	3 cut(s)	282, 395, 540
NlaIII	CATG	3 cut(s)	146, 241, 301
NmuCI	GTSAC	1 cut(s)	94
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	237
PciSI	GCTCTTC	2 cut(s)	68, 565
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	31, 189
PkrI	GCNGC	4 cut(s)	13, 136, 493, 550
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
Ppu21I	YACGTR	1 cut(s)	374
PshAI	GACNNNNGTC	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	453
PspCI	CACGTG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	75, 368
PsuI	RGATCY	1 cut(s)	395
SapI	GCTCTTC	2 cut(s)	68, 565
SaqAI	TTAA	2 cut(s)	450, 622
SatI	GCNGC	4 cut(s)	12, 135, 492, 549
Sau3AI	GATC	3 cut(s)	282, 395, 540
Sau96I	GGNCC	2 cut(s)	75, 368
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	3 cut(s)	209, 484, 560
SfaNI	GCATC	2 cut(s)	231, 370
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	2 cut(s)	75, 368
Sse9I	AATT	4 cut(s)	266, 333, 390, 536
SsiI	CCGC	4 cut(s)	9, 12, 70, 165
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	3 cut(s)	297, 552, 609
TaaI	ACNGT	3 cut(s)	94, 260, 365
TaiI	ACGT	3 cut(s)	90, 376, 448
TasI	AATT	4 cut(s)	266, 333, 390, 536
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	31, 189
Tru1I	TTAA	2 cut(s)	450, 622
Tru9I	TTAA	2 cut(s)	450, 622
TscAI	CASTG	3 cut(s)	209, 370, 481
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	3 cut(s)	134, 491, 548
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	549
TspRI	CASTG	3 cut(s)	209, 370, 481
VpaK11BI	GGWCC	2 cut(s)	75, 368
XceI	RCATGY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.