Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001881

Physical Location & Seq

Genomic Coordinates Reverse (-)

18045965 .. 18047401

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCCTAAGCAAATCCACGAGATCAAGGACTTCCTTCTGACAGCTAGAAGGAAAGATGCACGATCTGTGAAGATCAAGAGAAGCAAGGATATTGTCAAGTTTAAGGTCAGATGCTCGAGGTACCTCTACACGCTCTGCGTCTTTGACCAAGAGAAAGCCGACAAGCTTAAGCAGTCTCTTCCTCCAGGTTTGAGTGTACAAGACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L38e

Protein Analysis

69

Amino Acids

8.12

Weight (kDa)

9.95

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L38e	PF01781	2 - 68	5.2e-36	Ribosomal L38e protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43460 AT3G59540
fragaria_vesca	FvH4_2g11140 FvH4_2g12030 FvH4_3g31637 FvH4_6g00180 FvH4_6g00180
malus_domestica	MD03G1210200.v1.1 MD04G1045900.v1.1 MD04G1247500.v1.1 MD05G1254000.v1.1 MD05G1339000.v1.1 MD11G1200200.v1.1 MD12G1262900.v1.1 MD13G1258200.v1.1 MD15G1353900.v1.1
prunus_persica	Prupe.1G193400_v2.0.a1 Prupe.1G198900_v2.0.a1 Prupe.6G363900_v2.0.a1 Prupe.7G035900_v2.0.a1
pyrus_communis	pycom04g21820 pycom12g24090
rosa_chinensis	RchiOBHm_Chr3g0447551 RchiOBHm_Chr6g0269441
rosa_laevigata	RLG00000025704
rosa_multiflora	Rmu_co8253789.1_g000001 Rmu_sc0000743.1_g000005 Rmu_sc0003550.1_g000008 Rmu_sc0027627.1_g000001 Rmu_sc0037294.1_g000003
rosa_roxburghii	Rroxscaffold_7G00198720
rosa_rugosa	Rorug02G0602700 Rorug02G0602800 Rorug05G0286200 Rorug05G0286200 Rorug06G0047800
rosa_samantha	Rh2CG566400 Rh3CG339700 Rh5CG368600 Rh5DG420000 Rh6CG167700 Rh6DG159700
rosa_wichuraiana	Rw2G024710 Rw3G000200 Rw5G036920 Rw6G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	120
AccB1I	GGYRCC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	122, 198
AflII	CTTAAG	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	2 cut(s)	44, 166
AluI	AGCT	2 cut(s)	44, 166
Alw26I	GTCTC	1 cut(s)	180
Ama87I	CYCGRG	1 cut(s)	115
Asp718I	GGTACC	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	120
BauI	CACGAG	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	122
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	46, 101
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	120
BsiHKCI	CYCGRG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	115
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	21, 62, 72
BspLI	GGNNCC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	120
BspTI	CTTAAG	1 cut(s)	167
BsrGI	TGTACA	1 cut(s)	196
BssMI	GATC	3 cut(s)	21, 62, 72
BssSI	CACGAG	1 cut(s)	17
Bst2BI	CACGAG	1 cut(s)	17
Bst2UI	CCWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	6
BstKTI	GATC	3 cut(s)	24, 65, 75
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	3 cut(s)	21, 62, 72
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	2 cut(s)	121, 197
CviJI	RGCY	3 cut(s)	44, 158, 166
CviKI_1	RGCY	3 cut(s)	44, 158, 166
CviQI	GTAC	2 cut(s)	121, 197
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	3 cut(s)	23, 64, 74
DpnII	GATC	3 cut(s)	21, 62, 72
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	184
FspBI	CTAG	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	39, 110
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	42, 44
HpyCH4V	TGCA	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	6
KpnI	GGTACC	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	21, 62, 72
LpnPI	CCDG	2 cut(s)	171, 198
LweI	GCATC	2 cut(s)	46, 101
MaeI	CTAG	1 cut(s)	45
MalI	GATC	3 cut(s)	23, 64, 74
MboI	GATC	3 cut(s)	21, 62, 72
MboII	GAAGA	2 cut(s)	82, 170
MnlI	CCTC	3 cut(s)	111, 134, 192
MseI	TTAA	2 cut(s)	102, 168
MspCI	CTTAAG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	186
NdeII	GATC	3 cut(s)	21, 62, 72
NlaIV	GGNNCC	1 cut(s)	122
PaeR7I	CTCGAG	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	122
PspXI	VCTCGAGB	1 cut(s)	115
RsaI	GTAC	2 cut(s)	122, 198
RsaNI	GTAC	2 cut(s)	121, 197
SaqAI	TTAA	2 cut(s)	102, 168
Sau3AI	GATC	3 cut(s)	21, 62, 72
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	7 cut(s)	46, 108, 122, 126, 168, 190, 207
SfaNI	GCATC	2 cut(s)	46, 101
Sfr274I	CTCGAG	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	115, 167
SmoI	CTYRAG	2 cut(s)	115, 167
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	184
TaqI	TCGA	1 cut(s)	116
TatI	WGTACW	1 cut(s)	196
Tru1I	TTAA	2 cut(s)	102, 168
Tru9I	TTAA	2 cut(s)	102, 168
Vha464I	CTTAAG	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	115
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.