Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8253789.1

Orthogroup ID

OG0001881

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 374

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8253789.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

atccatgagatcaaggatttcctcctgactgcaagaaggaaggatgcccgttctgtgaaaatcaagaagacgaaggacgcagtcaagttcaaggttcgatgctccaagtacctttacacactttgtgtgtttgatactgagaaggctgataagttgaagcaatcccttcctccaggtttgagcgtccaggatctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L38e

Protein Analysis

65

Amino Acids

7.53

Weight (kDa)

9.78

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43460 AT3G59540
fragaria_vesca	FvH4_2g11140 FvH4_2g12030 FvH4_3g31637 FvH4_6g00180 FvH4_6g00180
malus_domestica	MD03G1210200.v1.1 MD04G1045900.v1.1 MD04G1247500.v1.1 MD05G1254000.v1.1 MD05G1339000.v1.1 MD11G1200200.v1.1 MD12G1262900.v1.1 MD13G1258200.v1.1 MD15G1353900.v1.1
prunus_persica	Prupe.1G193400_v2.0.a1 Prupe.1G198900_v2.0.a1 Prupe.6G363900_v2.0.a1 Prupe.7G035900_v2.0.a1
pyrus_communis	pycom04g21820 pycom12g24090
rosa_chinensis	RchiOBHm_Chr3g0447551 RchiOBHm_Chr6g0269441
rosa_laevigata	RLG00000025704
rosa_multiflora	Rmu_co8253789.1_g000001 Rmu_sc0000743.1_g000005 Rmu_sc0003550.1_g000008 Rmu_sc0027627.1_g000001 Rmu_sc0037294.1_g000003
rosa_roxburghii	Rroxscaffold_7G00198720
rosa_rugosa	Rorug02G0602700 Rorug02G0602800 Rorug05G0286200 Rorug05G0286200 Rorug06G0047800
rosa_samantha	Rh2CG566400 Rh3CG339700 Rh5CG368600 Rh5DG420000 Rh6CG167700 Rh6DG159700
rosa_wichuraiana	Rw2G024710 Rw3G000200 Rw5G036920 Rw6G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	91, 157
AjnI	CCWGG	2 cut(s)	172, 186
AlwNI	CAGNNNCTG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	74
BciT130I	CCWGG	2 cut(s)	174, 188
Bme1390I	CCNGG	2 cut(s)	174, 188
BmrFI	CCNGG	2 cut(s)	174, 188
BmsI	GCATC	2 cut(s)	34, 89
BpiI	GAAGAC	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	156
BseBI	CCWGG	2 cut(s)	174, 188
BseGI	GGATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	9, 190
BspCNI	CTCAG	1 cut(s)	130
BssMI	GATC	2 cut(s)	9, 190
Bst2UI	CCWGG	2 cut(s)	174, 188
BstDEI	CTNAG	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	2 cut(s)	12, 193
BstMBI	GATC	2 cut(s)	9, 190
BstNI	CCWGG	2 cut(s)	174, 188
BstSCI	CCNGG	2 cut(s)	172, 186
BstV2I	GAAGAC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	193
CseI	GACGC	2 cut(s)	86, 172
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	1 cut(s)	5
CviJI	RGCY	1 cut(s)	146
CviKI_1	RGCY	1 cut(s)	146
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	11, 192
DpnII	GATC	2 cut(s)	9, 190
DraIII	CACNNNGTG	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	172, 186
FaeI	CATG	1 cut(s)	8
FaiI	YATR	1 cut(s)	6
FatI	CATG	1 cut(s)	4
FokI	GGATG	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	156
HgaI	GACGC	2 cut(s)	86, 172
Hin1II	CATG	1 cut(s)	8
Hpy188III	TCNNGA	2 cut(s)	25, 64
HpyAV	CCTTC	5 cut(s)	30, 34, 67, 136, 176
HpyCH4V	TGCA	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	8
Kzo9I	GATC	2 cut(s)	9, 190
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	4 cut(s)	38, 159, 173, 186
LweI	GCATC	2 cut(s)	34, 89
MalI	GATC	2 cut(s)	11, 192
MboI	GATC	2 cut(s)	9, 190
MboII	GAAGA	1 cut(s)	79
MflI	RGATCY	1 cut(s)	190
MnlI	CCTC	2 cut(s)	32, 180
MspR9I	CCNGG	2 cut(s)	174, 188
MvaI	CCWGG	2 cut(s)	174, 188
NdeII	GATC	2 cut(s)	9, 190
NlaIII	CATG	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	80
PfoI	TCCNGGA	1 cut(s)	186
Psp6I	CCWGG	2 cut(s)	172, 186
PspGI	CCWGG	2 cut(s)	172, 186
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
Sau3AI	GATC	2 cut(s)	9, 190
ScrFI	CCNGG	2 cut(s)	174, 188
SetI	ASST	3 cut(s)	96, 114, 178
SfaNI	GCATC	2 cut(s)	34, 89
StyD4I	CCNGG	2 cut(s)	172, 186
TaqI	TCGA	1 cut(s)	97
Tth111I	GACNNNGTC	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.