MD11G1200200.v1.1

Belongs to the eukaryotic ribosomal protein eL38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001881
Physical Location & Seq
Forward (+)
28855058 .. 28855348
291 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1200200.v1.1.491

Sequence Viewer

Length: 291 bp
ATGAGGCTTCTGGCGTTGATAGCCTCCTCGAACTTTGAGAGAAAACTCGCAGCCTCCGGTCTCGACCGAGCAATAAGCAAAATGCCGAAGCAGATCCATGAGATCAAGGATTTCCTTCTAACTGCAAGAAGGAAGGATGCCCGCAATGTCAAAATCAAGAGGACCAAGGATGCTGTCAAGTTCAAGGTTCGGTGCTCCAAGTACCTTTACACACTTTGTGTGTTTGATTCCGAGAAGGCCGAAAAGTTGAAGCAATCTTTTCCTTCGGGTTTGAACGTTCAGGACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L38e

Protein Analysis

97

Amino Acids

11.03

Weight (kDa)

10.11

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L38e PF01781 29 - 95 4e-33 Ribosomal L38e protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 142
AclI AACGTT 1 cut(s) 276
AclWI GGATC 1 cut(s) 88
AdeI CACNNNGTG 1 cut(s) 218
AfaI GTAC 1 cut(s) 203
AgsI TTSAA 3 cut(s) 184, 250, 274
Alw21I GWGCWC 1 cut(s) 197
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 1 cut(s) 88
AoxI GGCC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 50
AspS9I GGNCC 2 cut(s) 162, 283
AvaII GGWCC 2 cut(s) 162, 283
Bbv12I GWGCWC 1 cut(s) 197
BbvI GCAGC 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 65
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme18I GGWCC 2 cut(s) 162, 283
BmgT120I GGNCC 2 cut(s) 162, 283
BmsI GCATC 2 cut(s) 127, 160
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 2 cut(s) 142, 175
BseMI GCAATG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 16
BseXI GCAGC 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 65
BsnI GGCC 1 cut(s) 239
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 93, 102
BspACI CCGC 1 cut(s) 142
BspANI GGCC 1 cut(s) 239
BspPI GGATC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 93, 102
BssT1I CCWWGG 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 2 cut(s) 142, 175
BstKTI GATC 2 cut(s) 96, 105
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 2 cut(s) 93, 102
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
BsuRI GGCC 1 cut(s) 239
BtsCI GGATG 2 cut(s) 142, 175
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 162, 283
Csp6I GTAC 1 cut(s) 202
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 7, 23, 53, 239
CviKI_1 RGCY 4 cut(s) 7, 23, 53, 239
CviQI GTAC 1 cut(s) 202
DpnI GATC 2 cut(s) 95, 104
DpnII GATC 2 cut(s) 93, 102
DraIII CACNNNGTG 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 2 cut(s) 162, 283
EcoO109I RGGNCCY 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 1 cut(s) 101
FaiI YATR 1 cut(s) 99
FatI CATG 1 cut(s) 97
FauI CCCGC 1 cut(s) 149
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 2 cut(s) 149, 182
Fsp4HI GCNGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 51
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 57
Hin1II CATG 1 cut(s) 101
HinfI GANTC 1 cut(s) 227
HpaII CCGG 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 62, 157, 281
HpyAV CCTTC 5 cut(s) 123, 125, 127, 229, 273
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 1 cut(s) 101
Kzo9I GATC 2 cut(s) 93, 102
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 2 cut(s) 70, 266
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 127, 160
MaeII ACGT 1 cut(s) 276
MalI GATC 2 cut(s) 95, 104
MboI GATC 2 cut(s) 93, 102
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 197
MnlI CCTC 4 cut(s) 34, 37, 64, 153
MspI CCGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 20
NdeII GATC 2 cut(s) 93, 102
NlaIII CATG 1 cut(s) 101
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 283
Psp1406I AACGTT 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 283
PspPI GGNCC 2 cut(s) 162, 283
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 93, 102
Sau96I GGNCC 2 cut(s) 162, 283
SduI GDGCHC 1 cut(s) 197
SetI ASST 4 cut(s) 189, 207, 279, 288
SfaNI GCATC 2 cut(s) 127, 160
SinI GGWCC 2 cut(s) 162, 283
SsiI CCGC 1 cut(s) 142
StyI CCWWGG 1 cut(s) 165
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 29, 63
TaqII GACCGA 1 cut(s) 81
TfiI GAWTC 1 cut(s) 227
TseI GCWGC 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 162, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.